.gitignore
INSTALL
MANIFEST.in
README
setup.py
./telomerecat/bin/telomerecat
telomerecat/__init__.py
telomerecat/bam2length.py
telomerecat/bam2telbam.py
telomerecat/estimateinsert.py
telomerecat/simulator.py
telomerecat/telbam2length.py
telomerecat.egg-info/PKG-INFO
telomerecat.egg-info/SOURCES.txt
telomerecat.egg-info/dependency_links.txt
telomerecat.egg-info/not-zip-safe
telomerecat.egg-info/requires.txt
telomerecat.egg-info/top_level.txt
telomerecat/bin/__init__.py
telomerecat/bin/telomerecat
telomerecat/bowtie2-2.2.4-linux/bowtie2
telomerecat/bowtie2-2.2.4-linux/bowtie2-align-l
telomerecat/bowtie2-2.2.4-linux/bowtie2-align-l-debug
telomerecat/bowtie2-2.2.4-linux/bowtie2-align-s
telomerecat/bowtie2-2.2.4-linux/bowtie2-align-s-debug
telomerecat/bowtie2-2.2.4-linux/bowtie2-build
telomerecat/bowtie2-2.2.4-linux/bowtie2-build-l
telomerecat/bowtie2-2.2.4-linux/bowtie2-build-l-debug
telomerecat/bowtie2-2.2.4-linux/bowtie2-build-s
telomerecat/bowtie2-2.2.4-linux/bowtie2-build-s-debug
telomerecat/bowtie2-2.2.4-linux/bowtie2-inspect
telomerecat/bowtie2-2.2.4-linux/bowtie2-inspect-l
telomerecat/bowtie2-2.2.4-linux/bowtie2-inspect-l-debug
telomerecat/bowtie2-2.2.4-linux/bowtie2-inspect-s
telomerecat/bowtie2-2.2.4-linux/bowtie2-inspect-s-debug
telomerecat/bowtie2-2.2.4-linux/scripts/convert_quals.pl
telomerecat/bowtie2-2.2.4-linux/scripts/debug_wrapper.pl
telomerecat/bowtie2-2.2.4-linux/scripts/gen_2b_occ_lookup.pl
telomerecat/bowtie2-2.2.4-linux/scripts/gen_occ_lookup.pl
telomerecat/bowtie2-2.2.4-linux/scripts/gen_solqual_lookup.pl
telomerecat/bowtie2-2.2.4-linux/scripts/infer_fraglen.pl
telomerecat/bowtie2-2.2.4-linux/scripts/make_a_thaliana_tair.sh
telomerecat/bowtie2-2.2.4-linux/scripts/make_b_taurus_UMD3.sh
telomerecat/bowtie2-2.2.4-linux/scripts/make_c_elegans.sh
telomerecat/bowtie2-2.2.4-linux/scripts/make_canFam2.sh
telomerecat/bowtie2-2.2.4-linux/scripts/make_d_melanogaster.sh
telomerecat/bowtie2-2.2.4-linux/scripts/make_e_coli.sh
telomerecat/bowtie2-2.2.4-linux/scripts/make_h_sapiens_ncbi36.sh
telomerecat/bowtie2-2.2.4-linux/scripts/make_h_sapiens_ncbi37.sh
telomerecat/bowtie2-2.2.4-linux/scripts/make_hg18.sh
telomerecat/bowtie2-2.2.4-linux/scripts/make_hg19.sh
telomerecat/bowtie2-2.2.4-linux/scripts/make_m_musculus_ncbi37.sh
telomerecat/bowtie2-2.2.4-linux/scripts/make_mm10.sh
telomerecat/bowtie2-2.2.4-linux/scripts/make_mm9.sh
telomerecat/bowtie2-2.2.4-linux/scripts/make_rn4.sh
telomerecat/bowtie2-2.2.4-linux/scripts/make_s_cerevisiae.sh
telomerecat/bowtie2-2.2.4-macos/bowtie2
telomerecat/bowtie2-2.2.4-macos/bowtie2-align-l
telomerecat/bowtie2-2.2.4-macos/bowtie2-align-l-debug
telomerecat/bowtie2-2.2.4-macos/bowtie2-align-s
telomerecat/bowtie2-2.2.4-macos/bowtie2-align-s-debug
telomerecat/bowtie2-2.2.4-macos/bowtie2-build
telomerecat/bowtie2-2.2.4-macos/bowtie2-build-l
telomerecat/bowtie2-2.2.4-macos/bowtie2-build-l-debug
telomerecat/bowtie2-2.2.4-macos/bowtie2-build-s
telomerecat/bowtie2-2.2.4-macos/bowtie2-build-s-debug
telomerecat/bowtie2-2.2.4-macos/bowtie2-inspect
telomerecat/bowtie2-2.2.4-macos/bowtie2-inspect-l
telomerecat/bowtie2-2.2.4-macos/bowtie2-inspect-l-debug
telomerecat/bowtie2-2.2.4-macos/bowtie2-inspect-s
telomerecat/bowtie2-2.2.4-macos/bowtie2-inspect-s-debug
telomerecat/bowtie2-2.2.4-macos/scripts/convert_quals.pl
telomerecat/bowtie2-2.2.4-macos/scripts/debug_wrapper.pl
telomerecat/bowtie2-2.2.4-macos/scripts/gen_2b_occ_lookup.pl
telomerecat/bowtie2-2.2.4-macos/scripts/gen_occ_lookup.pl
telomerecat/bowtie2-2.2.4-macos/scripts/gen_solqual_lookup.pl
telomerecat/bowtie2-2.2.4-macos/scripts/infer_fraglen.pl
telomerecat/bowtie2-2.2.4-macos/scripts/make_a_thaliana_tair.sh
telomerecat/bowtie2-2.2.4-macos/scripts/make_b_taurus_UMD3.sh
telomerecat/bowtie2-2.2.4-macos/scripts/make_c_elegans.sh
telomerecat/bowtie2-2.2.4-macos/scripts/make_canFam2.sh
telomerecat/bowtie2-2.2.4-macos/scripts/make_d_melanogaster.sh
telomerecat/bowtie2-2.2.4-macos/scripts/make_e_coli.sh
telomerecat/bowtie2-2.2.4-macos/scripts/make_h_sapiens_ncbi36.sh
telomerecat/bowtie2-2.2.4-macos/scripts/make_h_sapiens_ncbi37.sh
telomerecat/bowtie2-2.2.4-macos/scripts/make_hg18.sh
telomerecat/bowtie2-2.2.4-macos/scripts/make_hg19.sh
telomerecat/bowtie2-2.2.4-macos/scripts/make_m_musculus_ncbi37.sh
telomerecat/bowtie2-2.2.4-macos/scripts/make_mm10.sh
telomerecat/bowtie2-2.2.4-macos/scripts/make_mm9.sh
telomerecat/bowtie2-2.2.4-macos/scripts/make_rn4.sh
telomerecat/bowtie2-2.2.4-macos/scripts/make_s_cerevisiae.sh
telomerecat/telomere_reference/telomere.fa
telomerecat/telomere_reference/telomere.fa.1.bt2
telomerecat/telomere_reference/telomere.fa.2.bt2
telomerecat/telomere_reference/telomere.fa.3.bt2
telomerecat/telomere_reference/telomere.fa.4.bt2
telomerecat/telomere_reference/telomere.fa.rev.1.bt2
telomerecat/telomere_reference/telomere.fa.rev.2.bt2
telomerecat/telomere_reference/telomere_nonbin.fa