Metadata-Version: 2.1
Name: karyopype
Version: 0.1.6
Summary: Chromosomal visualization in Python.
Home-page: http://github.com/jakevc/karyopype
Author: Jake VanCampen
Author-email: jake.vancampen7@gmail.com
License: MIT
Description: [![CircleCI](https://circleci.com/gh/jakevc/karyopype.svg?style=svg)](https://circleci.com/gh/jakevc/karyopype)
        
        # karyopype
        
        Karyopype is a simple chromosome plotting package in python allowing you to quickly visualize where a set of genomic regions, or multiple sets of genomic regions fall on the chromosomes.
        
        
        From an interactive python session (jupyter notebook):
        ```python
        pip install karyopype
        import karyopype.karyopype as kp
        
        # plot two sets of regions
        kp.plot_karyopype("hg38", ["/path/to/regions.bed", "/path/to/regions2.bed"])
        ```
        
        ![](karyopype/data/hg19_karyopype.png)
        
        From a command line session
        ```python
        pip install karyopype
        python
        >>> import karyopype.karyopype as kp
        # save plot to current directory
        >>> kp.plot_karyopyp("hg38", "/path/to/regions.bed", savefig=True)
        ```
Keywords: Bioinformatics
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Other Environment
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: POSIX :: Linux
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Topic :: Scientific/Engineering
Description-Content-Type: text/markdown
