Metadata-Version: 2.1
Name: scplot
Version: 0.0.16
Summary: Single cell plotting
Home-page: https://github.com/klarman-cell-observatory/scPlot
Author: Joshua Gould
Author-email: jgould@broadinstitute.org
License: BSD license
Keywords: plot
Platform: UNKNOWN
Classifier: License :: OSI Approved :: BSD License
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Natural Language :: English
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Visualization
Description-Content-Type: text/markdown
Requires-Dist: anndata
Requires-Dist: colorcet
Requires-Dist: holoviews
Requires-Dist: hvplot
Requires-Dist: natsort
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: scipy

# scPlot

Interactive single cell plotting library for [anndata](https://anndata.readthedocs.io/) objects.

## Installation
`pip install scplot`

# Features
 - Plot millions of cells on a 2-dimensional grid.
 - Interactively explore multiple features and embeddings simultaneously.

# Screenshots
![embedding](https://github.com/klarman-cell-observatory/scPlot/raw/master/images/embedding.png)
![composition_plot](https://github.com/klarman-cell-observatory/scPlot/raw/master/images/composition_plot.png)
![heatmap](https://github.com/klarman-cell-observatory/scPlot/raw/master/images/heatmap.png)
![dotplot](https://github.com/klarman-cell-observatory/scPlot/raw/master/images/dotplot.png)
![violin](https://github.com/klarman-cell-observatory/scPlot/raw/master/images/violin.png)
![scatter](https://github.com/klarman-cell-observatory/scPlot/raw/master/images/scatter.png)
![variable_features](https://github.com/klarman-cell-observatory/scPlot/raw/master/images/variable_features.png)

## Example Notebook
[View example notebook](https://nbviewer.jupyter.org/github/klarman-cell-observatory/scPlot/blob/master/notebooks/scplot.ipynb?flush_cache=true)

[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/klarman-cell-observatory/scPlot/master)




