.gitignore
README.md
pyproject.toml
tools_testing.py
tox.ini
.github/workflows/docs.yml
.github/workflows/tests.yml
demos/jupyter/LAI_visualization.ipynb
demos/jupyter/PhenObj.ipynb
demos/jupyter/SNPObj.ipynb
demos/jupyter/SNP_PCA.ipynb
demos/jupyter/TorchPCA.ipynb
demos/rst/SNP_PCA/SNP_PCA.rst
demos/rst/SNP_PCA/output_11_0.png
demos/rst/SNP_PCA/output_13_1.png
demos/rst/SNP_PCA/output_15_1.png
demos/rst/SNP_PCA/output_16_1.png
demos/rst/SNP_PCA/output_18_1.png
demos/rst/SNP_PCA/output_19_1.png
demos/rst/SNP_PCA/output_21_1.png
demos/rst/SNP_PCA/output_26_0.png
demos/rst/SNP_PCA/output_30_1.png
demos/rst/SNP_PCA/output_32_1.png
demos/rst/SNP_PCA/output_8_0.png
demos/rst/TorchPCA/TorchPCA.rst
demos/rst/TorchPCA/output_25_0.png
snputils/__init__.py
snputils.egg-info/PKG-INFO
snputils.egg-info/SOURCES.txt
snputils.egg-info/dependency_links.txt
snputils.egg-info/entry_points.txt
snputils.egg-info/requires.txt
snputils.egg-info/top_level.txt
snputils/_utils/__init__.py
snputils/_utils/_process.py
snputils/ancestry/__init__.py
snputils/ancestry/genobj/__init__.py
snputils/ancestry/genobj/base.py
snputils/ancestry/genobj/local.py
snputils/ancestry/genobj/wide.py
snputils/ancestry/io/__init__.py
snputils/ancestry/io/local/__init__.py
snputils/ancestry/io/local/others.py
snputils/ancestry/io/local/read/__init__.py
snputils/ancestry/io/local/read/base.py
snputils/ancestry/io/local/read/mspReader.py
snputils/ancestry/io/local/write/__init__.py
snputils/ancestry/io/local/write/base.py
snputils/ancestry/io/local/write/mspWriter.py
snputils/ancestry/io/wide/__init__.py
snputils/ancestry/io/wide/read/__init__.py
snputils/ancestry/io/wide/read/admixture_reader.py
snputils/ancestry/io/wide/read/base.py
snputils/ancestry/io/wide/read/structure_reader.py
snputils/ancestry/io/wide/write/__init__.py
snputils/ancestry/io/wide/write/admixture_writer.py
snputils/ancestry/io/wide/write/base.py
snputils/phenotype/__init__.py
snputils/phenotype/genobj/__init__.py
snputils/phenotype/genobj/multi_phenobj.py
snputils/phenotype/genobj/ukb_phenobj.py
snputils/phenotype/io/read/__init__.py
snputils/phenotype/io/read/base.py
snputils/phenotype/io/read/multiPhenTabular.py
snputils/phenotype/io/read/ukbPhenReader.py
snputils/processing/__init__.py
snputils/processing/pca.py
snputils/simulation/__init__.py
snputils/simulation/pyadmix/__init__.py
snputils/simulation/pytorch/__init__.py
snputils/snp/__init__.py
snputils/snp/genobj/__init__.py
snputils/snp/genobj/snpobj.py
snputils/snp/io/__init__.py
snputils/snp/io/read/__init__.py
snputils/snp/io/read/auto.py
snputils/snp/io/read/base.py
snputils/snp/io/read/bed.py
snputils/snp/io/read/pgen.py
snputils/snp/io/read/vcf.py
snputils/snp/io/read/__test__/conftest.py
snputils/snp/io/read/__test__/test_auto.py
snputils/snp/io/read/__test__/test_formats.py
snputils/snp/io/read/__test__/test_phased.py
snputils/snp/io/write/__init__.py
snputils/snp/io/write/bed.py
snputils/snp/io/write/pgen.py
snputils/snp/io/write/vcf.py
snputils/stats/__init__.py
snputils/stats/f3.py
snputils/stats/fst.py
snputils/tools/__init__.py
snputils/tools/admixture_mapping.py
snputils/tools/dummy_tool.py
snputils/tools/main.py
snputils/tools/pca.py
snputils/visualization/__init__.py
snputils/visualization/admixture_viz.py
snputils/visualization/lai.py