Metadata-Version: 1.2
Name: freesurfer-surface
Version: 0.1.0
Summary: Python Library to Read and Write Surface Files in Freesurfer's TriangularSurface Format
Home-page: https://github.com/fphammerle/freesurfer-surface
Author: Fabian Peter Hammerle
Author-email: fabian@hammerle.me
License: UNKNOWN
Description: Python Library to Read and Write Surface Files in Freesurfer's TriangularSurface Format
        
        compatible with Freesurfer's MRISwriteTriangularSurface()
        https://github.com/freesurfer/freesurfer/blob/release_6_0_0/include/mrisurf.h#L1281
        https://github.com/freesurfer/freesurfer/blob/release_6_0_0/utils/mrisurf.c
        https://raw.githubusercontent.com/freesurfer/freesurfer/release_6_0_0/utils/mrisurf.c
        
        Freesurfer
        https://surfer.nmr.mgh.harvard.edu/
        
        Edit Surface File
        >>> from freesurfer_surface import Surface, Vertex, Triangle
        >>>
        >>> surface = Surface.read_triangular('bert/surf/lh.pial'))
        >>>
        >>> vertex_a = surface.add_vertex(Vertex(0.0, 0.0, 0.0))
        >>> vertex_b = surface.add_vertex(Vertex(1.0, 1.0, 1.0))
        >>> vertex_c = surface.add_vertex(Vertex(2.0, 2.0, 2.0))
        >>> surface.triangles.append(Triangle((vertex_a, vertex_b, vertex_c)))
        >>>
        >>> surface.write_triangular('somewhere/else/lh.pial')
        
        List Labels in Annotation File
        >>> from freesurfer_surface import Annotation
        >>>
        >>> annotation = Annotation.read('bert/label/lh.aparc.annot')
        >>> for label in annotation.labels.values():
        >>>     print(label.index, label.hex_color_code, label.name)
        
        Find Border of Labelled Region
        >>> surface = Surface.read_triangular('bert/surf/lh.pial'))
        >>> surface.load_annotation_file('bert/label/lh.aparc.annot')
        >>> region, = filter(lambda l: l.name == 'precentral',
        >>>                  annotation.labels.values())
        >>> print(surface.find_label_border_polygonal_chains(region))
Keywords: brain,freesurfer,mesh,neuroimaging,reader,surface,triangle,vertex
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Healthcare Industry
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Topic :: Scientific/Engineering :: Information Analysis
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
Classifier: Topic :: Utilities
Requires-Python: >=3.5
