Metadata-Version: 1.1
Name: targeneintersect
Version: 0.2.4
Summary: Use pybedtools intersect to gain target gene information in pandas dataframes
Home-page: https://github.com/isabelleberger/targeneintersect
Author: Isabelle Berger
Author-email: isabelle.c.berger@gmail.com
License: MIT license
Description: ===================
        TargetGeneIntersect
        ===================
        
        
        .. image:: https://img.shields.io/pypi/v/targeneintersect.svg
                :target: https://pypi.python.org/pypi/targeneintersect
        
        .. image:: https://img.shields.io/travis/isabelleberger/targeneintersect.svg
                :target: https://travis-ci.org/isabelleberger/targeneintersect
        
        .. image:: https://readthedocs.org/projects/targeneintersect/badge/?version=latest
                :target: https://targeneintersect.readthedocs.io/en/latest/?badge=latest
                :alt: Documentation Status
        
        
        .. image:: https://pyup.io/repos/github/isabelleberger/targeneintersect/shield.svg
             :target: https://pyup.io/repos/github/isabelleberger/targeneintersect/
             :alt: Updates
        
        
        
        A baby package that uses `pybedtools <https://github.com/daler/pybedtools>`_ intersect to gain target gene names for genomic data in a pandas dataframe. My first attempt at packaging, as well as a useful little tool for something I end up copying and pasting all the time.
        
        * Free software: MIT license
        * Documentation: https://targeneintersect.readthedocs.io.
        
        
        Features
        --------
        
        * Input a BED formatted gene file and a BED formatted dataframe of genomic data
        * Receive a dataframe that now includes target gene names
        
        Credits
        -------
        
        This package is based on the `BEDTools <https://github.com/arq5x/bedtools2>`_ function intersect, as implemented in python by `pybedtools <https://github.com/daler/pybedtools>`_. This package was created with `Cookiecutter <https://github.com/audreyr/cookiecutter>`_ and the `audreyr/cookiecutter-pypackage <https://github.com/audreyr/cookiecutter-pypackage>`_ project template.
        
        
        =======
        History
        =======
        
        0.1.0 (2018-06-25)
        ------------------
        
        * First release on PyPI.
        
        0.2.0 (2018-06-29)
        ------------------
        
        * Fixed code style
        * Added pytest testing
        * Added travis CI
        
        0.2.1 (2018-06-29)
        ------------------
        
        * Fixes a mistake with travis CI 
        
Keywords: targeneintersect
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
