Metadata-Version: 1.1
Name: sequana
Version: 0.1.2
Summary: Put a short description here
Home-page: ['http://github.com/sequana/']
Author: yourname
Author-email: email@whatever.org
License: GPL
Download-URL: ['http://pypi.python.org/pypi/sequana']
Description: SEQUANA
        ############
        
        .. image:: https://badge.fury.io/py/sequana.svg
            :target: https://pypi.python.org/pypi/sequana
        
        .. image:: https://travis-ci.org/sequana/sequana.svg?branch=master
            :target: https://travis-ci.org/sequana/sequana
        
        .. image:: https://coveralls.io/repos/github/sequana/sequana/badge.svg?branch=master
            :target: https://coveralls.io/github/sequana/sequana?branch=master 
        
        .. image:: http://readthedocs.org/projects/sequana/badge/?version=latest
            :target: http://sequana.readthedocs.org/en/latest/?badge=latest
            :alt: Documentation Status
        
        :Python version: Python 2.7, 3.4 and 3.5
        :Online documentation: `On readthedocs <http://sequana.readthedocs.org/>`_
        :Issues and bug reports: `On github <https://github.com/sequana/sequana/issues>`_
        
        
        
        
        
        
        **Sequana** includes a set of pipelines related to NGS (new generation sequencing). 
        
        It will provide a set of modular pipelines and reports associated to them.
        
        
        Installation
        =================
        
        If you already already install dependencies, this should install the latest release::
        
            pip install sequana --upgrade
        
        Some dependencies required include matplotlib, pandas, cutadapt, pysam. If you
        are new or starting with Python, we strongly recommand you to use anaconda. We use the **bioconda** channel, which can be
        added to your environment as follows::
        
            conda config --add channels r
            conda config --add channels bioconda
            
        Then, install those dependencies::
        
            conda install numpy matplotlib pandas cutadapt pysam bwa bcftools pyvcf samtools snakemake biokit bioservices bedtools picard freebayes
        
        although the code is Python2.7 and Python3.5 compatible, a dependency
        (Snakemake) only supports Python3.5 for the moment so we will support only Python3.5 version. If you wish to use functionalities of Sequana that do not make use of Snakemake, you may still used it with Python2.7.
        
        Developers can also install other tols::
        
            conda install nose coverage
        
        **Please see the** `documentation <http://sequana.readthedocs.org>`_ **for usage and examples**
        
        
        
        
        
        
Platform: Linux
Platform: Unix
Platform: MacOsX
Platform: Windows
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU Library or Lesser General Public License (LGPL)
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 2.7
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Information Analysis
Classifier: Topic :: Scientific/Engineering :: Mathematics
Classifier: Topic :: Scientific/Engineering :: Physics
