Metadata-Version: 2.1
Name: pdb2af
Version: 0.0.19
Summary: pdb2af downloads AF2 predictions that overlap with PDB structures
Home-page: https://github.com/nickjf/pdb2af
Author: Nick J Fowler
Author-email: nickjfowler0@gmail.com
Project-URL: Bug Tracker, https://github.com/nickjf/pdb2af/issues
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.6
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: pdb-tools


# pdb2af v0.0.19

pdb2af uses SIFTS (https://www.ebi.ac.uk/pdbe/docs/sifts/) to download protein structures from the AlphaFold Protein Structure Database that overlap with PDB structures.

## Installation

pdb2af is installed using pip (https://packaging.python.org/en/latest/tutorials/installing-packages/). 

`pip install pdb2af`


## Running pdb2af

pdb2af reads in a text file with PDB IDs. You need to be connected to the internet.

`pdb2af -i pdb_ids.txt` 

Options:

`-i` text file with list of PDB IDs
`-u` update the SIFTS mapping between PDB IDs and UniProt accession numbers


## Help

Contact Nick Fowler (njfowler.com) for support, queries or suggestions.











