CHANGELOG.rst
LICENSE
MANIFEST.in
Makefile
README.rst
_tskitmodule.c
setup.cfg
setup.py
stress_lowlevel.py
lib/CHANGELOG.rst
lib/Makefile
lib/argtable3.c
lib/argtable3.h
lib/main.c
lib/old_tests.c
lib/test_core.c
lib/test_genotypes.c
lib/test_tables.c
lib/test_trees.c
lib/testlib.c
lib/testlib.h
lib/tsk_convert.c
lib/tsk_convert.h
lib/tsk_core.c
lib/tsk_core.h
lib/tsk_genotypes.c
lib/tsk_genotypes.h
lib/tsk_stats.c
lib/tsk_stats.h
lib/tsk_tables.c
lib/tsk_tables.h
lib/tsk_trees.c
lib/tsk_trees.h
lib/tskit.h
lib/kastore/c/kastore.c
lib/kastore/c/kastore.h
tests/__init__.py
tests/simplify.py
tests/test_dict_encoding.py
tests/test_drawing.py
tests/test_file_format.py
tests/test_highlevel.py
tests/test_lowlevel.py
tests/test_metadata.py
tests/test_newick.py
tests/test_provenance.py
tests/test_stats.py
tests/test_tables.py
tests/test_threads.py
tests/test_topology.py
tests/test_tree_stats.py
tests/test_vcf.py
tests/test_wright_fisher.py
tests/tsutil.py
tests/data/SLiM/README
tests/data/SLiM/minimal-example.trees
tests/data/SLiM/minimal-example.txt
tests/data/SLiM/single-locus-example.trees
tests/data/SLiM/single-locus-example.txt
tests/data/hdf5-formats/msprime-0.3.0_v2.0.hdf5
tests/data/hdf5-formats/msprime-0.4.0_v3.1.hdf5
tests/data/hdf5-formats/msprime-0.5.0_v10.0.hdf5
tests/data/simplify-bugs/01-edges.txt
tests/data/simplify-bugs/01-mutations.txt
tests/data/simplify-bugs/01-nodes.txt
tests/data/simplify-bugs/01-sites.txt
tests/data/simplify-bugs/02-edges.txt
tests/data/simplify-bugs/02-mutations.txt
tests/data/simplify-bugs/02-nodes.txt
tests/data/simplify-bugs/02-sites.txt
tests/data/simplify-bugs/03-edges.txt
tests/data/simplify-bugs/03-mutations.txt
tests/data/simplify-bugs/03-nodes.txt
tests/data/simplify-bugs/03-sites.txt
tests/data/simplify-bugs/04-edges.txt
tests/data/simplify-bugs/04-mutations.txt
tests/data/simplify-bugs/04-nodes.txt
tests/data/simplify-bugs/04-sites.txt
tests/data/simplify-bugs/05-edges.txt
tests/data/simplify-bugs/05-mutations.txt
tests/data/simplify-bugs/05-nodes.txt
tests/data/simplify-bugs/05-sites.txt
tskit/__init__.py
tskit/_version.py
tskit/drawing.py
tskit/exceptions.py
tskit/formats.py
tskit/provenance.py
tskit/provenance.schema.json
tskit/stats.py
tskit/tables.py
tskit/trees.py
tskit.egg-info/PKG-INFO
tskit.egg-info/SOURCES.txt
tskit.egg-info/dependency_links.txt
tskit.egg-info/entry_points.txt
tskit.egg-info/requires.txt
tskit.egg-info/top_level.txt