Metadata-Version: 1.0
Name: pyseqlib
Version: 0.1.0
Summary: pySeqLib: A small python library to process sequencing data.
Home-page: UNKNOWN
Author: Yuanhua Huang
Author-email: Y.Huang@ed.ac.uk
License: MIT
Description-Content-Type: UNKNOWN
Description: pySeqLib
        ========
        
        A small python library to process sequencing data. It is under active development.
        
        
        What's inside?
        ---------------
        
        * ``intronX``: a program to fetch sequence related features for introns: 
          1) length, 2) splice site motif strength, 3) second structure energy 
          4) frequecy of k-mers. See manual_ and example_.
        
        * ``pymfold``: a python wrap of mfold for calculate energy of RNA secondary 
          structure.
        
        * ``motif-score``: a motif score calculate
        
        * a sequence mapper to find lariat in RNA-seq reads (under test)
        
        * a sam file resampling method
        
        
        .. _manual: https://github.com/huangyh09/pyseqlib/blob/master/doc/intronX_manual.rst
        .. _example: https://sourceforge.net/projects/pyseqlib/files/intronX-example/
        
        
        How to install?
        ---------------
        
        Download the codes from this github repository and then run the following command line:
        
        ::
        
            python setup.py install
        
        If you don't have the root permission, add ``--user``.
        
        Rquired libraries: ``pysam``,  ``numpy``, ``Cython``.
        
        
Keywords: sequencing data processing
Platform: UNKNOWN
