Metadata-Version: 2.1
Name: element-array-ephys
Version: 0.2.11
Summary: DataJoint Element for Extracellular Array Electrophysiology
Home-page: https://github.com/datajoint/element-array-ephys
Author: DataJoint
Author-email: info@datajoint.com
License: MIT
Keywords: neuroscience electrophysiology science datajoint
Platform: UNKNOWN
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: datajoint (>=0.13)
Requires-Dist: element-interface (>=0.4.0)
Requires-Dist: ipywidgets
Requires-Dist: openpyxl
Requires-Dist: plotly
Requires-Dist: pyopenephys (>=1.1.6)
Requires-Dist: seaborn
Requires-Dist: scikit-image
Requires-Dist: spikeinterface
Requires-Dist: nbformat (>=4.2.0)
Provides-Extra: dev
Requires-Dist: pre-commit ; extra == 'dev'
Requires-Dist: pytest ; extra == 'dev'
Requires-Dist: pytest-cov ; extra == 'dev'
Provides-Extra: nwb
Requires-Dist: dandi ; extra == 'nwb'
Requires-Dist: neuroconv[ecephys] (>=0.2.0) ; extra == 'nwb'
Requires-Dist: pynwb (>=2.0.0) ; extra == 'nwb'

[![PyPI version](https://badge.fury.io/py/element-array-ephys.svg)](http://badge.fury.io/py/element-array-ephys)

# DataJoint Element for Extracellular Electrophysiology

DataJoint Element for extracellular array electrophysiology that processes data 
acquired with a polytrode probe
(e.g. [Neuropixels](https://www.neuropixels.org), Neuralynx) using the
[SpikeGLX](https://github.com/billkarsh/SpikeGLX) or
[OpenEphys](https://open-ephys.org/gui) acquisition software and 
[MATLAB-based Kilosort](https://github.com/MouseLand/Kilosort) or [python-based
Kilosort](https://github.com/MouseLand/pykilosort) spike sorting software. DataJoint 
Elements collectively standardize and automate data collection and analysis for 
neuroscience experiments. Each Element is a modular pipeline for data storage and 
processing with corresponding database tables that can be combined with other Elements 
to assemble a fully functional pipeline.

## Experiment flowchart

![flowchart](https://raw.githubusercontent.com/datajoint/element-array-ephys/main/images/diagram_flowchart.svg)

## Data Pipeline Diagram

![datajoint](https://raw.githubusercontent.com/datajoint/element-array-ephys/main/images/attached_array_ephys_element_acute.svg)


## Getting Started

+ Install from PyPI

     ```bash
     pip install element-array-ephys
     ```

+ [Interactive tutorial on GitHub Codespaces](https://github.com/datajoint/workflow-array-ephys#interactive-tutorial)

+ [Documentation](https://datajoint.com/docs/elements/element-array-ephys)

## Support

+ If you need help getting started or run into any errors, please contact our team by email at support@datajoint.com.


