Metadata-Version: 2.1
Name: ArraySplitter
Version: 1.1.2
Summary: De Novo Decomposition of Satellite DNA Arrays into Monomers within Telomere-to-Telomere Assemblies
Home-page: https://github.com/aglabx/ArraySplitter
Author: Aleksey Komissarov
Author-email: ad3002@gmail.com
License: BSD
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.6
Description-Content-Type: text/markdown
License-File: LICENSE

# ArraySplitter: De Novo Decomposition of Satellite DNA Arrays

Decomposes satellite DNA arrays into monomers within telomere-to-telomere (T2T) assemblies. Ideal for analyzing centromeric and pericentromeric regions on monomeric level.

**Status:** In development. Optimized for 100Kb scale arrays; longer arrays will work but may take longer to process. Signigicanlty longer time.

## Installation

**Prerequisites**

* Python 3.6 or later

**Installation with pip:**

```bash
pip install arraysplitter
```

## Usage

**Basic Example**

```bash
time arraysplitter --input chr1.arrays.fa --output chr1.arrays
```

**Explanation**

* **`--input chr1.arrays.fa`:**  FASTA file of satDNA arrays.
* **`--output chr1.arrays`:** Output FASTA containing decomposed monomers (separated by spaces).

**All Options** 

```bash
arraysplitter --help 
```

## Contact

For questions or support: ad3002@gmail.com
