.gitignore
LICENSE
MANIFEST.in
README.rst
bitbucket-pipelines.yml
config.example
setup.cfg
setup.py
docs/Makefile
docs/api.rst
docs/changelog.rst
docs/command_line.rst
docs/conf.py
docs/index.rst
docs/make.bat
docs/quickstart.rst
examples/stream_ft_file.py
hooks/pre-commit.sh
requirements/development.txt
requirements/pipeline.txt
requirements/readthedocs.txt
sblu/__init__.py
sblu/cluspro.py
sblu/cluster.py
sblu/config.py
sblu/ft.py
sblu/grids.py
sblu/job.py
sblu/one_letter.py
sblu/pdb.py
sblu/rmsd.py
sblu/util.py
sblu/version.py
sblu/xyztraj.py
sblu.egg-info/PKG-INFO
sblu.egg-info/SOURCES.txt
sblu.egg-info/dependency_links.txt
sblu.egg-info/entry_points.txt
sblu.egg-info/requires.txt
sblu.egg-info/top_level.txt
sblu/cli/__init__.py
sblu/cli/main.py
sblu/cli/util.py
sblu/cli/atlas/__init__.py
sblu/cli/atlas/cmd_to_pdb.py
sblu/cli/cluspro/__init__.py
sblu/cli/cluspro/cmd_download.py
sblu/cli/cluspro/cmd_local.py
sblu/cli/cluspro/cmd_minimize.py
sblu/cli/cluspro/cmd_submit.py
sblu/cli/docking/__init__.py
sblu/cli/docking/cmd_cluster.py
sblu/cli/docking/cmd_gen_cluster_pdb.py
sblu/cli/docking/cmd_piper.py
sblu/cli/ftmap/__init__.py
sblu/cli/ftmap/cmd_download.py
sblu/cli/ftmap/cmd_submit.py
sblu/cli/measure/__init__.py
sblu/cli/measure/cmd_evaluate.py
sblu/cli/measure/cmd_ftrmsd.py
sblu/cli/measure/cmd_pwrmsd.py
sblu/cli/measure/cmd_srmsd.py
sblu/cli/pdb/__init__.py
sblu/cli/pdb/cmd_clean.py
sblu/cli/pdb/cmd_get.py
sblu/cli/pdb/cmd_pdb_psf_concat.py
sblu/cli/pdb/cmd_prep.py
sblu/cli/pdb/cmd_psfgen.py
sblu/cli/pdb/cmd_splitsegs.py
sblu/cli/xyztraj/__init__.py
sblu/cli/xyztraj/cmd_gen_cluster_pdb.py
sblu/io/__init__.py
sblu/io/atlas.py
sblu/pymol/__init__.py
sblu/pymol/importing.py
scripts/cl_load_job
scripts/cluspro_local.py
scripts/make_one_letter.py
tests/__init__.py
tests/test_ft.py
tests/test_io_atlas.py
tests/test_pdb.py
tests/test_xyztraj.py
tests/cli/__init__.py
tests/cli/test_atlas.py
tests/cli/test_ftrmsd.py
tests/cli/test_gen_cluster_pdb.py
tests/cli/test_get.py
tests/cli/test_prep.py
tests/cli/test_pwrmsd.py
tests/cli/test_xyztraj_get_cluster_pdb.py
tests/data/clusters.test
tests/data/clusters.test.json
tests/data/clusters_sym.test
tests/data/pdb_list
tests/data/small_molecule.default.pdb
tests/data/small_molecule.json
tests/data/small_molecule.params.pdb
tests/data/xyztraj.xyz
tests/data/xyztraj_long.xyz
tests/data/ft/ft.000.00
tests/data/ft/ft.cluster_models
tests/data/ft/ft.cluster_models_sym
tests/data/ft/ft.test
tests/data/pdb/1ck7.clean.pdb
tests/data/pdb/1ck7.pdb
tests/data/pdb/1ck7_ngen.pdb
tests/data/pdb/1ck7_ngen.psf
tests/data/pdb/1ck7_ngen_noseg.pdb
tests/data/pdb/1e1n.clean.pdb
tests/data/pdb/1e1n.pdb
tests/data/pdb/1e1n_ngen.pdb
tests/data/pdb/1e1n_ngen.psf
tests/data/pdb/1e1n_ngen_noseg.pdb
tests/data/pdb/1eax.clean.pdb
tests/data/pdb/1eax.pdb
tests/data/pdb/1eax_ngen.pdb
tests/data/pdb/1eax_ngen.psf
tests/data/pdb/1eax_ngen_noseg.pdb
tests/data/pdb/1gjr.clean.pdb
tests/data/pdb/1gjr.pdb
tests/data/pdb/1gjr_ngen.pdb
tests/data/pdb/1gjr_ngen.psf
tests/data/pdb/1gjr_ngen_noseg.pdb
tests/data/pdb/1jae.clean.pdb
tests/data/pdb/1jae.pdb
tests/data/pdb/1jae_ngen.pdb
tests/data/pdb/1jae_ngen.psf
tests/data/pdb/1jae_ngen_noseg.pdb
tests/data/pdb/1k2i.clean.pdb
tests/data/pdb/1k2i.pdb
tests/data/pdb/1k2i_ngen.pdb
tests/data/pdb/1k2i_ngen.psf
tests/data/pdb/1k2i_ngen_noseg.pdb
tests/data/pdb/1pig.clean.pdb
tests/data/pdb/1pig.pdb
tests/data/pdb/1pig_ngen.pdb
tests/data/pdb/1pig_ngen.psf
tests/data/pdb/1pig_ngen_noseg.pdb
tests/data/pdb/1qqu.clean.pdb
tests/data/pdb/1qqu.pdb
tests/data/pdb/1qqu_ngen.pdb
tests/data/pdb/1qqu_ngen.psf
tests/data/pdb/1qqu_ngen_noseg.pdb
tests/data/pdb/1rgh.clean.pdb
tests/data/pdb/1rgh.pdb
tests/data/pdb/1rgh_ngen.pdb
tests/data/pdb/1rgh_ngen.psf
tests/data/pdb/1rgh_ngen_noseg.pdb
tests/data/pdb/1trm.clean.pdb
tests/data/pdb/1trm.pdb
tests/data/pdb/1trm_ngen.pdb
tests/data/pdb/1trm_ngen.psf
tests/data/pdb/1trm_ngen_noseg.pdb
tests/data/pdb/2cga.clean.pdb
tests/data/pdb/2cga.pdb
tests/data/pdb/2cga_ngen.pdb
tests/data/pdb/2cga_ngen.psf
tests/data/pdb/2cga_ngen_noseg.pdb
tests/data/pdb/2pka.clean.pdb
tests/data/pdb/2pka.pdb
tests/data/pdb/2pka_ngen.pdb
tests/data/pdb/2pka_ngen.psf
tests/data/pdb/2pka_ngen_noseg.pdb
tests/data/pdb/2tgt.clean.pdb
tests/data/pdb/2tgt.pdb
tests/data/pdb/2tgt_ngen.pdb
tests/data/pdb/2tgt_ngen.psf
tests/data/pdb/2tgt_ngen_noseg.pdb
tests/data/pdb/3gmu.clean.pdb
tests/data/pdb/3gmu.pdb
tests/data/pdb/3gmu_ngen.pdb
tests/data/pdb/3gmu_ngen.psf
tests/data/pdb/3gmu_ngen_noseg.pdb
tests/data/pdb/4pep.clean.pdb
tests/data/pdb/4pep.pdb
tests/data/pdb/4pep_ngen.pdb
tests/data/pdb/4pep_ngen.psf
tests/data/pdb/4pep_ngen_noseg.pdb
tests/data/pdb/9est.clean.pdb
tests/data/pdb/9est.pdb
tests/data/pdb/9est_ngen.pdb
tests/data/pdb/9est_ngen.psf
tests/data/pdb/9est_ngen_noseg.pdb
tests/data/pdb/9rsa.clean.pdb
tests/data/pdb/9rsa.pdb
tests/data/pdb/9rsa_ngen.pdb
tests/data/pdb/9rsa_ngen.psf
tests/data/pdb/9rsa_ngen_noseg.pdb
tests/data/pdb/cys.clean.pdb
tests/data/pdb/cys.pdb
tests/data/pdb/cys_ngen.pdb
tests/data/pdb/cys_ngen.psf
tests/data/pdb/cys_ngen_noseg.pdb
tests/data/pdb/cluster_models/1avx_l_u_nmin.pdb
tests/data/pdb/cluster_models/lig.00.pdb
tests/data/pdb/cluster_models/lig.01.pdb
tests/data/pdb/cluster_models/lig.02.pdb
tests/data/pdb/cluster_models/lig_sym.00.2.pdb
tests/data/pdb/cluster_models/lig_sym.00.3.pdb
tests/data/pdb/cluster_models/lig_sym.00.4.pdb
tests/data/pdb/cluster_models/lig_sym.00.pdb
tests/data/pdb/cluster_models/lig_sym.01.2.pdb
tests/data/pdb/cluster_models/lig_sym.01.3.pdb
tests/data/pdb/cluster_models/lig_sym.01.4.pdb
tests/data/pdb/cluster_models/lig_sym.01.pdb
tests/data/pdb/cluster_models/lig_sym.02.2.pdb
tests/data/pdb/cluster_models/lig_sym.02.3.pdb
tests/data/pdb/cluster_models/lig_sym.02.4.pdb
tests/data/pdb/cluster_models/lig_sym.02.pdb
tests/data/pdb/cluster_models/prot_sym.pdb
tests/data/pdb/concat/lig.pdb
tests/data/pdb/concat/lig.psf
tests/data/pdb/concat/rec.pdb
tests/data/pdb/concat/rec.psf
tests/data/pdb/concat/reclig.pdb
tests/data/pdb/concat/reclig.psf
tests/data/prms/prot_na.prm
tests/data/prms/prot_na.rtf
tests/data/prms/rot.cluster_models.mol2
tests/data/prms/rot.cluster_models_sym.mol2
tests/data/prms/rotation_test_set.mol2
tests/data/prms/rotation_test_set.prm