Metadata-Version: 1.1
Name: PyEntrezId
Version: 1.5.3
Summary: Converts UniProt, HGNC, and Ensembl Transcript Ids to         Entrez Gene Id. Also, converts accession number to Taxonomy id
Home-page: https://github.com/lwgray/pyEntrezId
Author: Larry Gray
Author-email: lwgray@gmail.com
License: UNKNOWN
Download-URL: https://github.com/lwgray/pyEntrezId/tarball/1.5.3
Description: PyEntrezId
        ==========
        
            Python package to convert between various gene or protein IDs
        
        .. image:: https://travis-ci.org/lwgray/pyEntrezId.svg?branch=master
           :target: https://travis-ci.org/lwgray/pyEntrezId
        .. image:: https://coveralls.io/repos/github/lwgray/pyEntrezId/badge.svg?branch=master
           :target: https://coveralls.io/github/lwgray/pyEntrezId?branch=master    
        .. image:: https://img.shields.io/pypi/v/pyEntrezId.svg
           :target: https://pypi.python.org/pypi/pyEntrezId
        .. image:: https://img.shields.io/pypi/pyversions/PyEntrezId.svg
           :target: https://pypi.python.org/pypi/PyEntrezId
        .. image:: https://img.shields.io/badge/license-MIT-blue.svg
           :target: https://raw.githubusercontent.com/lwgray/lwgray/pyEntrezId/master/LICENSE
        
        Quick Start
        -----------
        
        ::
        
            $ pip install --upgrade pyEntrezId
        
        Examples
        --------
        
        Convert Ensemble Transcript Gene Id to Entrez Gene Id
        -----------------------------------------------------
        
        .. code:: python
            from PyEntrezId import Conversion
        
            EnsemblId = 'ENST00000407559'
            Id = Conversion('sampleemail@nih.gov') #include your email address
            EntrezId = Id.convert_ensembl_to_entrez(EnsemblId)
            print(EntrezId)  # Returns a String
        
        
        Convert HGNC ID to Entrez Gene Id
        ---------------------------------
        
        .. code:: python
            from PyEntrezId import Conversion
        
            HGNCID = 9245  # HGNCID can be just the number or 'HGNC:9425'
            Id = Conversion('sampleemail@nih.gov') # include your email address
            EntrezId = Id.convert_hgnc_to_entrez(HGNCID)
            print EntrezID  # Returns a dictionary containing Symbol and Entrez Id
        
        
        Convert Entrez Gene Id to Uniprot ID
        ------------------------------------
        
        .. code:: python
            from PyEntrezId import Conversion
        
            EntrezID = 39
            Id = Conversion('sampleemail@nih.gov') #include your email address
            UniProtId = Id.convert_entrez_to_uniprot(EntrezID)
            print UniProtId  # Returns a string
        
        
        Convert Uniprot Id to Entrez Gene Id
        ------------------------------------
        
        .. code:: python
            from PyEntrezId import Conversion
        
            UniProtId = 'Q9BWD1'
            Id = Conversion('sampleemail@nih.gov') #include your email address
            EntrezID = Id.convert_uniprot_to_entrez(UniProtId)
            print EntrezID # Returns a string
        
        
        Convert Accession Id to Taxonomy Id
        -----------------------------------
        
        .. code:: python
            from PyEntrezId import Conversion
        
            AccessionId = 'AC131209'
            Id = Conversion('sampleemail@nih.gov') #include your email address
            TaxID = Id.convert_accesion_to_taxid(AccesionId)
            print TaxID # Returns a string
        
        Contributing
        ------------
        
        Contributions to this library are always welcome and highly encouraged.
        
        See 'CONTRIBUTING'_ for more information on how to get started.
        
        .. _CONTRIBUTING: https://github.com/lwgray/PyEntrezId/blob/master/CONTRIBUTING.rst
        
        License
        -------
        
        The MIT License (MIT)
        
        .. _LICENSE: https://github.com/lwgray/PyEntrezID/blob/master/LICENSE
        
Keywords: Ensembl,Entrez,Gene,HGNC,UniProt,Taxid,Accession,Taxonomy,Accesion Number,NCBI,NLM,DNA,Convert,Genomics,Biology
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Operating System :: OS Independent
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.6
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
