Metadata-Version: 2.1
Name: pyham
Version: 1.1.3
Summary: A tool to analyse Hierarchical Orthologous Groups (HOGs)
Home-page: http://lab.dessimoz.org/ham
Author: Dessimoz Lab - Laboratory of Computational Evolutionary Biology and Genomics
Author-email: adrian.altenhoff@inf.ethz.ch
License: MIT
Description: pyHam: A Tool to Analyze Hierarchical Orthologous Groups (HOGs)
        ===============================================================
        
        
        Motivation
        ----------
        pyHam is a library to facilitate the analysis of hierarchical orthologous groups.
        It also contains a few tools to run standard type of analysis.
        
        Currently, Ham is limited to analyze HOGs that are stored in an orthoXML file.
        More information on the schema of orthoxml and some examples are
        available at http://orthoxml.org.
        
        For extended documentation we refer to the docs folder that contain information
        on common use cases and API documentation of the library.
        
        
        Installation
        ------------
        Ham is written in python3 (also compatible with python2), with little external dependencies, i.e.
        currently ete3, lml, six. The setup script should resolve these
        dependencies automatically.
        Consider using pip to install the package directly from a checked out git repo
        
        .. code-block:: sh
        
           python -m pip install --upgrade pip
           pip install pyham
        
        GETTING STARTED
        ---------------
        We create a small introductory blog post about HOGs and pyHam at http://lab.dessimoz.org/blog/2017/06/29/pyham. We highly recommend you to read it before starting using pyHam.
        
        We also create an ipython notebook to help you with basic uses of pyHam API and embedded tools at http://zoo.cs.ucl.ac.uk/tutorials/tutorial_pyHam_get_started.html.
        
        
        DOCUMENTATION
        -------------
        You can the full documentation of pyHam at http://zoo.cs.ucl.ac.uk/doc/pyham/index.html
        
        
        
Keywords: orthology, HOGs, orthoxml
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Environment :: Console
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Provides-Extra: test
Provides-Extra: dev
