Metadata-Version: 1.0
Name: ultraheatmap
Version: 1.2.2
Summary: UNKNOWN
Home-page: UNKNOWN
Author: UNKNOWN
Author-email: UNKNOWN
License: MIT
Description: # ultraheatmap
        
        ultraheatmap facilitates the production of [deepTools](https://github.com/deeptools/deepTools)
        heatmaps. The heatmaps typically show signal at genomic regions, which can be
        appended by orthogonal data, like associated gene expression. ultraheatmap
        facilitates adding orthogonal data to a deepTools matrix and allows to cluster a
        genomic heatmap by selected samples in just one single command-line call.
        
        
        ## Getting Started
        
        These instructions will get you a copy of ultraheatmap up and running on your local machine.
        
        ### Prerequisites
        
        The Prerequisites can be found in requirements.yaml
        
        ### Installation
        
        First, get the source code:
        
                     git clone https://github.com/maxplanck-ie/ultraheatmap.git
        
        Afterwards, create a new conda environment with all the Prerequisites by running the following command line:
        
                      conda env create -f requirements.yaml
        
        
        Then activate the environment:
        
                      conda activate ultraheatmap
        
        To install the program in this environment:
        
                      python setup.py install
        
        Alternatively, `pip` or `conda` can be used to install the package. We highly recommend you to create a new conda environment prior to the installation and install it after activating this environment.
        
        from the ultraheatmap directory. Now, you already have the program installed and can access each of the modules by calling them. Try
        
                    $  ultraheatmap -h ,
        
                    $  computeOrderedMatrix -h
        
        or
        
        
                    $  AddFeatureToMatrix -h
        
        To terminate the environment run:
        
                      conda deactivate
        
Platform: UNKNOWN
