MANIFEST.in
README.rst
setup.py
scripts/sortseq_tools
sortseq_tools.egg-info/PKG-INFO
sortseq_tools.egg-info/SOURCES.txt
sortseq_tools.egg-info/dependency_links.txt
sortseq_tools.egg-info/not-zip-safe
sortseq_tools.egg-info/requires.txt
sortseq_tools.egg-info/top_level.txt
src/EstimateMutualInfoforMImax.py
src/Models.py
src/OLD_profile_info.py
src/__init__.py
src/_nsb.py
src/evaluate_model.py
src/fast.c
src/fast.pyx
src/gauge_fix.py
src/info.py
src/io.py
src/learn_matrix.py
src/numerics.py
src/predictiveinfo.py
src/preprocess.py
src/profile_ct.py
src/profile_freq.py
src/profile_info.py
src/profile_mut.py
src/qc.py
src/run_tests.py
src/scan_model.py
src/simulate_expression.py
src/simulate_library.py
src/simulate_sort.py
src/sortseq_for_doc.py
src/stepper.py
src/utils.py
src/validate.py
tests/__init__.py
tests/dms_1.py
tests/profile_functions.py
tests/profile_functions_dms.py
tests/profile_functions_mpra.py
tests/run_commandline_tests.py
tests/test_fast.py
tests/test_numerics.py
tests/test_seqvarray.py
tests/code/__init__.py
tests/code/test_info.py
tests/code/test_io.py
tests/code/test_preprocess.py
tests/code/test_profile_ct.py
tests/code/test_profile_freq.py
tests/code/test_profile_info.py
tests/code/test_profile_mut.py
tests/commands/__init__.py
tests/input/__init__.py
tests/output/__init__.py