LICENSE
README.md
pyproject.toml
setup.cfg
setup.py
seqgra/__init__.py
seqgra/constants.py
seqgra/data-config.xsd
seqgra/idresolver.py
seqgra/misc.py
seqgra/model-config.xsd
seqgra/schema.py
seqgra/seqgra.py
seqgra/seqgraa.py
seqgra/seqgrae.py
seqgra/seqgras.py
seqgra.egg-info/PKG-INFO
seqgra.egg-info/SOURCES.txt
seqgra.egg-info/dependency_links.txt
seqgra.egg-info/entry_points.txt
seqgra.egg-info/requires.txt
seqgra.egg-info/top_level.txt
seqgra/comparator/__init__.py
seqgra/comparator/comparator.py
seqgra/comparator/curvetablecomparator.py
seqgra/comparator/fietablecomparator.py
seqgra/comparator/prcomparator.py
seqgra/comparator/roccomparator.py
seqgra/comparator/tablecomparator.py
seqgra/evaluator/__init__.py
seqgra/evaluator/evaluator.py
seqgra/evaluator/metricsevaluator.py
seqgra/evaluator/plotagreement.R
seqgra/evaluator/predictevaluator.py
seqgra/evaluator/prevaluator.py
seqgra/evaluator/rocevaluator.py
seqgra/evaluator/sisevaluator.py
seqgra/evaluator/explainer/occlusion.py
seqgra/evaluator/explainer/patterns.py
seqgra/evaluator/explainer/perturbation.py
seqgra/evaluator/explainer/real_time/__init__.py
seqgra/evaluator/explainer/real_time/pytorch_fixes.py
seqgra/evaluator/explainer/real_time/resnet_encoder.py
seqgra/evaluator/explainer/real_time/saliency_eval.py
seqgra/evaluator/gradientbased/__init__.py
seqgra/evaluator/gradientbased/abstractdifferencegradientevaluator.py
seqgra/evaluator/gradientbased/abstractgradientevaluator.py
seqgra/evaluator/gradientbased/contrastiveexcitationbackpropevaluator.py
seqgra/evaluator/gradientbased/deconvevaluator.py
seqgra/evaluator/gradientbased/deepliftevaluator.py
seqgra/evaluator/gradientbased/differencegradientevaluator.py
seqgra/evaluator/gradientbased/ebphelper.py
seqgra/evaluator/gradientbased/excitationbackpropevaluator.py
seqgra/evaluator/gradientbased/feedbackevaluator.py
seqgra/evaluator/gradientbased/gradcamgradientevaluator.py
seqgra/evaluator/gradientbased/gradientbasedevaluator.py
seqgra/evaluator/gradientbased/gradientevaluator.py
seqgra/evaluator/gradientbased/gradientxinputevaluator.py
seqgra/evaluator/gradientbased/guidedbackpropevaluator.py
seqgra/evaluator/gradientbased/integratedgradientevaluator.py
seqgra/evaluator/gradientbased/nonlinearintegratedgradientevaluator.py
seqgra/evaluator/gradientbased/saliencyevaluator.py
seqgra/evaluator/gradientbased/smoothgradevaluator.py
seqgra/evaluator/sis/__init__.py
seqgra/evaluator/sis/sis.py
seqgra/learner/__init__.py
seqgra/learner/dna.py
seqgra/learner/dnahelper.py
seqgra/learner/learner.py
seqgra/learner/protein.py
seqgra/learner/proteinhelper.py
seqgra/learner/bayes/__init__.py
seqgra/learner/bayes/bayeshelper.py
seqgra/learner/bayes/bayeslearner.py
seqgra/learner/tensorflow/__init__.py
seqgra/learner/tensorflow/kerascallback.py
seqgra/learner/tensorflow/kerashelper.py
seqgra/learner/tensorflow/keraslearner.py
seqgra/learner/torch/__init__.py
seqgra/learner/torch/torchdataset.py
seqgra/learner/torch/torchhelper.py
seqgra/learner/torch/torchlearner.py
seqgra/model/__init__.py
seqgra/model/data/__init__.py
seqgra/model/data/alphabetdistribution.py
seqgra/model/data/background.py
seqgra/model/data/condition.py
seqgra/model/data/datadefinition.py
seqgra/model/data/datageneration.py
seqgra/model/data/operation.py
seqgra/model/data/rule.py
seqgra/model/data/sequenceelement.py
seqgra/model/data/spacingconstraint.py
seqgra/model/model/__init__.py
seqgra/model/model/architecture.py
seqgra/model/model/modeldefinition.py
seqgra/model/model/operation.py
seqgra/parser/__init__.py
seqgra/parser/datadefinitionparser.py
seqgra/parser/modeldefinitionparser.py
seqgra/parser/xmldatadefinitionparser.py
seqgra/parser/xmlhelper.py
seqgra/parser/xmlmodeldefinitionparser.py
seqgra/simulator/__init__.py
seqgra/simulator/backgroundgenerator.py
seqgra/simulator/example.py
seqgra/simulator/examplegenerator.py
seqgra/simulator/simulator.py
seqgra/simulator/heatmap/__init__.py
seqgra/simulator/heatmap/heatmap.R
seqgra/simulator/heatmap/heatmap.py
seqgra/simulator/motif/__init__.py
seqgra/simulator/motif/ess.py
seqgra/simulator/motif/kld.py
seqgra/simulator/motif/motifinfo.py
seqgra/simulator/motif/similarity.R
seqgra/writer/__init__.py
seqgra/writer/datadefinitionwriter.py
seqgra/writer/modeldefinitionwriter.py
seqgra/writer/xmldatadefinitionwriter.py
seqgra/writer/xmlmodeldefinitionwriter.py