LICENSE
MANIFEST.in
README.md
setup.py
hifi_solves_run_humanwgs/__init__.py
hifi_solves_run_humanwgs/constants.py
hifi_solves_run_humanwgs/upload_and_run.py
hifi_solves_run_humanwgs.egg-info/PKG-INFO
hifi_solves_run_humanwgs.egg-info/SOURCES.txt
hifi_solves_run_humanwgs.egg-info/dependency_links.txt
hifi_solves_run_humanwgs.egg-info/entry_points.txt
hifi_solves_run_humanwgs.egg-info/requires.txt
hifi_solves_run_humanwgs.egg-info/top_level.txt
hifi_solves_run_humanwgs/__pycache__/__init__.cpython-311.pyc
hifi_solves_run_humanwgs/__pycache__/aws_functions.cpython-311.pyc
hifi_solves_run_humanwgs/__pycache__/constants.cpython-311.pyc
hifi_solves_run_humanwgs/__pycache__/upload_and_run.cpython-311.pyc
hifi_solves_run_humanwgs/backends/__init__.py
hifi_solves_run_humanwgs/backends/aws.py
hifi_solves_run_humanwgs/backends/azure.py
hifi_solves_run_humanwgs/backends/gcp.py
hifi_solves_run_humanwgs/backends/__pycache__/__init__.cpython-311.pyc
hifi_solves_run_humanwgs/backends/__pycache__/aws.cpython-311.pyc
hifi_solves_run_humanwgs/backends/__pycache__/azure.cpython-311.pyc
hifi_solves_run_humanwgs/backends/__pycache__/gcp.cpython-311.pyc
hifi_solves_run_humanwgs/workflows/__init__.py
hifi_solves_run_humanwgs/workflows/hifisolves_wrapper.wdl
hifi_solves_run_humanwgs/workflows/input_template.aws.json
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/.dockstore.yml
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/.git
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/.gitignore
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/.gitmodules
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/LICENSE
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/README.md
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/wdl-ci.config.json
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/.github/ISSUE_TEMPLATE/bug_report.md
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/.github/ISSUE_TEMPLATE/feature_request.md
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/.github/workflows/lint-test-workflows.yml
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/backends/aws/.gitignore
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/backends/aws/README.md
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/backends/aws/agc-project.template.yaml
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/backends/aws/inputs.aws.json
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/backends/azure/README.md
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/backends/azure/inputs.azure.json
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/backends/gcp/README.md
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/backends/gcp/inputs.gcp.json
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/backends/hpc/README.md
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/backends/hpc/inputs.hpc.json
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/backends/hpc/miniwdl.cfg
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/images/logo_wdl_workflows.svg
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/images/main.graphviz.svg
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/humanwgs_structs.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/input_template.json
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/main.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/cohort_analysis/cohort_analysis.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/cohort_analysis/inputs.json
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/sample_analysis/inputs.json
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/sample_analysis/sample_analysis.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/tertiary_analysis/inputs.json
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/tertiary_analysis/tertiary_analysis.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/.git
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/LICENSE
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/README.md
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/structs.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/tasks/bcftools_stats.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/tasks/concat_vcf.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/tasks/glnexus.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/tasks/mosdepth.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/tasks/pbsv_call.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/tasks/pbsv_discover.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/tasks/samtools_fasta.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/tasks/whatshap_haplotag.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/tasks/whatshap_phase.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/tasks/whatshap_stats.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/tasks/zip_index_vcf.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/workflows/backend_configuration/backend_configuration.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/workflows/deepvariant/deepvariant.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/workflows/deepvariant/inputs.json
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/workflows/hiphase/hiphase.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/workflows/hiphase/inputs.json
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/workflows/pharmcat/inputs.json
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/workflows/pharmcat/pharmcat.wdl
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/workflows/phase_vcf/inputs.json
hifi_solves_run_humanwgs/workflows/HiFi-human-WGS-WDL/workflows/wdl-common/wdl/workflows/phase_vcf/phase_vcf.wdl
tests/__init__.py
tests/test_aws.py
tests/test_upload_and_run.py