README.md
setup.py
bin/cluster_w_amber.py
bin/minimize_w_amber.py
bin/pdb2mol2
bin/prepare_md.py
bin/restart_md.py
bin/run_mmpbsa.py
mdkit/__init__.py
mdkit.egg-info/PKG-INFO
mdkit.egg-info/SOURCES.txt
mdkit.egg-info/dependency_links.txt
mdkit.egg-info/requires.txt
mdkit.egg-info/top_level.txt
mdkit/amber/PROTON_INFO
mdkit/amber/__init__.py
mdkit/amber/ambertools.py
mdkit/amber/atomic_ions.cmd
mdkit/amber/clustering.py
mdkit/amber/minimization.py
mdkit/namd/__init__.py
mdkit/namd/namdtools.py
mdkit/utility/__init__.py
mdkit/utility/babel.py
mdkit/utility/mol2.py
mdkit/utility/pdb.py
mdkit/utility/reader.py
mdkit/utility/utils.py
mdkit/utility/writer.py