CHANGELOG.md
MANIFEST.in
README.md
setup.py
bin/singlem
config/__init__.py
config/config.py
singlem/__init__.py
singlem/appraisal_result.py
singlem/appraiser.py
singlem/archive_otu_table.py
singlem/chancer.py
singlem/clusterer.py
singlem/dereplicator.py
singlem/diamond_parser.py
singlem/graftm_result.py
singlem/inquisit.py
singlem/known_otu_table.py
singlem/metagenome_otu_finder.py
singlem/ordered_set.py
singlem/otu_table.py
singlem/otu_table_collection.py
singlem/otu_table_entry.py
singlem/package_creator.py
singlem/pipe.py
singlem/placement_parser.py
singlem/querier.py
singlem/query_formatters.py
singlem/rarefier.py
singlem/regenerator.py
singlem/renew.py
singlem/sequence_classes.py
singlem/sequence_database.py
singlem/sequence_extractor.py
singlem/sequence_searcher.py
singlem/singlem.py
singlem/singlem_package.py
singlem/strain_summariser.py
singlem/summariser.py
singlem/taxonomy.py
singlem/taxonomy_bihash.py
singlem/uc_file.py
singlem/version.py
singlem.egg-info/PKG-INFO
singlem.egg-info/SOURCES.txt
singlem.egg-info/dependency_links.txt
singlem.egg-info/requires.txt
singlem.egg-info/top_level.txt
singlem/data/__init__.py
singlem/data/__init__.pyc
singlem/data/S1.1.ribosomal_protein_L2_rplB.gpkg.spkg/CONTENTS.json
singlem/data/S1.1.ribosomal_protein_L2_rplB.gpkg.spkg/S1.1.ribosomal_protein_L2_rplB/4.dmnd
singlem/data/S1.1.ribosomal_protein_L2_rplB.gpkg.spkg/S1.1.ribosomal_protein_L2_rplB/CONTENTS.json
singlem/data/S1.1.ribosomal_protein_L2_rplB.gpkg.spkg/S1.1.ribosomal_protein_L2_rplB/DNGNGWU00010_mingle_output_good_seqs.hmm
singlem/data/S1.1.ribosomal_protein_L2_rplB.gpkg.spkg/S1.1.ribosomal_protein_L2_rplB/graftm7rT8X6.faa
singlem/data/S1.1.ribosomal_protein_L2_rplB.gpkg.spkg/S1.1.ribosomal_protein_L2_rplB/graftmUShLiV_search.hmm
singlem/data/S1.1.ribosomal_protein_L2_rplB.gpkg.spkg/S1.1.ribosomal_protein_L2_rplB/graftmY0W8yc_search.hmm
singlem/data/S1.1.ribosomal_protein_L2_rplB.gpkg.spkg/S1.1.ribosomal_protein_L2_rplB/4.07.ribosomal_protein_L2_rplB_final.gpkg.refpkg/4.tre
singlem/data/S1.1.ribosomal_protein_L2_rplB.gpkg.spkg/S1.1.ribosomal_protein_L2_rplB/4.07.ribosomal_protein_L2_rplB_final.gpkg.refpkg/4.tre.log
singlem/data/S1.1.ribosomal_protein_L2_rplB.gpkg.spkg/S1.1.ribosomal_protein_L2_rplB/4.07.ribosomal_protein_L2_rplB_final.gpkg.refpkg/4_deduplicated_aligned.fasta
singlem/data/S1.1.ribosomal_protein_L2_rplB.gpkg.spkg/S1.1.ribosomal_protein_L2_rplB/4.07.ribosomal_protein_L2_rplB_final.gpkg.refpkg/4_seqinfo.csv
singlem/data/S1.1.ribosomal_protein_L2_rplB.gpkg.spkg/S1.1.ribosomal_protein_L2_rplB/4.07.ribosomal_protein_L2_rplB_final.gpkg.refpkg/4_taxonomy.csv
singlem/data/S1.1.ribosomal_protein_L2_rplB.gpkg.spkg/S1.1.ribosomal_protein_L2_rplB/4.07.ribosomal_protein_L2_rplB_final.gpkg.refpkg/CONTENTS.json
singlem/data/S1.1.ribosomal_protein_L2_rplB.gpkg.spkg/S1.1.ribosomal_protein_L2_rplB/4.07.ribosomal_protein_L2_rplB_final.gpkg.refpkg/phylo_modelvo2lKI.json
singlem/data/S1.1.ribosomal_protein_L2_rplB.gpkg.spkg/S1.1.ribosomal_protein_L2_rplB/4.07.ribosomal_protein_L2_rplB_final.gpkg.refpkg/treeStoZnD.tre
singlem/data/S1.10.ribosomal_protein_S7.gpkg.spkg/CONTENTS.json
singlem/data/S1.10.ribosomal_protein_S7.gpkg.spkg/S1.10.ribosomal_protein_S7/4.dmnd
singlem/data/S1.10.ribosomal_protein_S7.gpkg.spkg/S1.10.ribosomal_protein_S7/CONTENTS.json
singlem/data/S1.10.ribosomal_protein_S7.gpkg.spkg/S1.10.ribosomal_protein_S7/DNGNGWU00017_mingle_output_good_seqs.hmm
singlem/data/S1.10.ribosomal_protein_S7.gpkg.spkg/S1.10.ribosomal_protein_S7/graftm4pgsPY.faa
singlem/data/S1.10.ribosomal_protein_S7.gpkg.spkg/S1.10.ribosomal_protein_S7/graftmunofJO_search.hmm
singlem/data/S1.10.ribosomal_protein_S7.gpkg.spkg/S1.10.ribosomal_protein_S7/graftmvR14Hx_search.hmm
singlem/data/S1.10.ribosomal_protein_S7.gpkg.spkg/S1.10.ribosomal_protein_S7/4.17.ribosomal_protein_S7_final.gpkg.refpkg/4.tre
singlem/data/S1.10.ribosomal_protein_S7.gpkg.spkg/S1.10.ribosomal_protein_S7/4.17.ribosomal_protein_S7_final.gpkg.refpkg/4.tre.log
singlem/data/S1.10.ribosomal_protein_S7.gpkg.spkg/S1.10.ribosomal_protein_S7/4.17.ribosomal_protein_S7_final.gpkg.refpkg/4_deduplicated_aligned.fasta
singlem/data/S1.10.ribosomal_protein_S7.gpkg.spkg/S1.10.ribosomal_protein_S7/4.17.ribosomal_protein_S7_final.gpkg.refpkg/4_seqinfo.csv
singlem/data/S1.10.ribosomal_protein_S7.gpkg.spkg/S1.10.ribosomal_protein_S7/4.17.ribosomal_protein_S7_final.gpkg.refpkg/4_taxonomy.csv
singlem/data/S1.10.ribosomal_protein_S7.gpkg.spkg/S1.10.ribosomal_protein_S7/4.17.ribosomal_protein_S7_final.gpkg.refpkg/CONTENTS.json
singlem/data/S1.10.ribosomal_protein_S7.gpkg.spkg/S1.10.ribosomal_protein_S7/4.17.ribosomal_protein_S7_final.gpkg.refpkg/phylo_model3_PVrJ.json
singlem/data/S1.10.ribosomal_protein_S7.gpkg.spkg/S1.10.ribosomal_protein_S7/4.17.ribosomal_protein_S7_final.gpkg.refpkg/treenWN6in.tre
singlem/data/S1.11.ribosomal_protein_S10_rpsJ.gpkg.spkg/CONTENTS.json
singlem/data/S1.11.ribosomal_protein_S10_rpsJ.gpkg.spkg/S1.11.ribosomal_protein_S10_rpsJ/4.dmnd
singlem/data/S1.11.ribosomal_protein_S10_rpsJ.gpkg.spkg/S1.11.ribosomal_protein_S10_rpsJ/CONTENTS.json
singlem/data/S1.11.ribosomal_protein_S10_rpsJ.gpkg.spkg/S1.11.ribosomal_protein_S10_rpsJ/DNGNGWU00002_mingle_output_good_seqs.hmm
singlem/data/S1.11.ribosomal_protein_S10_rpsJ.gpkg.spkg/S1.11.ribosomal_protein_S10_rpsJ/graftm0qHlwZ.faa
singlem/data/S1.11.ribosomal_protein_S10_rpsJ.gpkg.spkg/S1.11.ribosomal_protein_S10_rpsJ/graftme9CA2v_search.hmm
singlem/data/S1.11.ribosomal_protein_S10_rpsJ.gpkg.spkg/S1.11.ribosomal_protein_S10_rpsJ/graftmmSefD1_search.hmm
singlem/data/S1.11.ribosomal_protein_S10_rpsJ.gpkg.spkg/S1.11.ribosomal_protein_S10_rpsJ/4.18.ribosomal_protein_S10_rpsJ_final.gpkg.refpkg/4.tre
singlem/data/S1.11.ribosomal_protein_S10_rpsJ.gpkg.spkg/S1.11.ribosomal_protein_S10_rpsJ/4.18.ribosomal_protein_S10_rpsJ_final.gpkg.refpkg/4.tre.log
singlem/data/S1.11.ribosomal_protein_S10_rpsJ.gpkg.spkg/S1.11.ribosomal_protein_S10_rpsJ/4.18.ribosomal_protein_S10_rpsJ_final.gpkg.refpkg/4_deduplicated_aligned.fasta
singlem/data/S1.11.ribosomal_protein_S10_rpsJ.gpkg.spkg/S1.11.ribosomal_protein_S10_rpsJ/4.18.ribosomal_protein_S10_rpsJ_final.gpkg.refpkg/4_seqinfo.csv
singlem/data/S1.11.ribosomal_protein_S10_rpsJ.gpkg.spkg/S1.11.ribosomal_protein_S10_rpsJ/4.18.ribosomal_protein_S10_rpsJ_final.gpkg.refpkg/4_taxonomy.csv
singlem/data/S1.11.ribosomal_protein_S10_rpsJ.gpkg.spkg/S1.11.ribosomal_protein_S10_rpsJ/4.18.ribosomal_protein_S10_rpsJ_final.gpkg.refpkg/CONTENTS.json
singlem/data/S1.11.ribosomal_protein_S10_rpsJ.gpkg.spkg/S1.11.ribosomal_protein_S10_rpsJ/4.18.ribosomal_protein_S10_rpsJ_final.gpkg.refpkg/phylo_modelt3BIy3.json
singlem/data/S1.11.ribosomal_protein_S10_rpsJ.gpkg.spkg/S1.11.ribosomal_protein_S10_rpsJ/4.18.ribosomal_protein_S10_rpsJ_final.gpkg.refpkg/treeNBUZbF.tre
singlem/data/S1.12.ribosomal_protein_S12_S23.gpkg.spkg/CONTENTS.json
singlem/data/S1.12.ribosomal_protein_S12_S23.gpkg.spkg/S1.12.ribosomal_protein_S12_S23/4.dmnd
singlem/data/S1.12.ribosomal_protein_S12_S23.gpkg.spkg/S1.12.ribosomal_protein_S12_S23/CONTENTS.json
singlem/data/S1.12.ribosomal_protein_S12_S23.gpkg.spkg/S1.12.ribosomal_protein_S12_S23/DNGNGWU00026_mingle_output_good_seqs.hmm
singlem/data/S1.12.ribosomal_protein_S12_S23.gpkg.spkg/S1.12.ribosomal_protein_S12_S23/graftm4bucq1_search.hmm
singlem/data/S1.12.ribosomal_protein_S12_S23.gpkg.spkg/S1.12.ribosomal_protein_S12_S23/graftmD68DOf_search.hmm
singlem/data/S1.12.ribosomal_protein_S12_S23.gpkg.spkg/S1.12.ribosomal_protein_S12_S23/graftmNF3uWk.faa
singlem/data/S1.12.ribosomal_protein_S12_S23.gpkg.spkg/S1.12.ribosomal_protein_S12_S23/4.19.ribosomal_protein_S12_S23_final.gpkg.refpkg/4.tre
singlem/data/S1.12.ribosomal_protein_S12_S23.gpkg.spkg/S1.12.ribosomal_protein_S12_S23/4.19.ribosomal_protein_S12_S23_final.gpkg.refpkg/4.tre.log
singlem/data/S1.12.ribosomal_protein_S12_S23.gpkg.spkg/S1.12.ribosomal_protein_S12_S23/4.19.ribosomal_protein_S12_S23_final.gpkg.refpkg/4_deduplicated_aligned.fasta
singlem/data/S1.12.ribosomal_protein_S12_S23.gpkg.spkg/S1.12.ribosomal_protein_S12_S23/4.19.ribosomal_protein_S12_S23_final.gpkg.refpkg/4_seqinfo.csv
singlem/data/S1.12.ribosomal_protein_S12_S23.gpkg.spkg/S1.12.ribosomal_protein_S12_S23/4.19.ribosomal_protein_S12_S23_final.gpkg.refpkg/4_taxonomy.csv
singlem/data/S1.12.ribosomal_protein_S12_S23.gpkg.spkg/S1.12.ribosomal_protein_S12_S23/4.19.ribosomal_protein_S12_S23_final.gpkg.refpkg/CONTENTS.json
singlem/data/S1.12.ribosomal_protein_S12_S23.gpkg.spkg/S1.12.ribosomal_protein_S12_S23/4.19.ribosomal_protein_S12_S23_final.gpkg.refpkg/phylo_model00Y09I.json
singlem/data/S1.12.ribosomal_protein_S12_S23.gpkg.spkg/S1.12.ribosomal_protein_S12_S23/4.19.ribosomal_protein_S12_S23_final.gpkg.refpkg/treejSTjiK.tre
singlem/data/S1.13.ribosomal_protein_S15P_S13e.gpkg.spkg/CONTENTS.json
singlem/data/S1.13.ribosomal_protein_S15P_S13e.gpkg.spkg/S1.13.ribosomal_protein_S15P_S13e/4.dmnd
singlem/data/S1.13.ribosomal_protein_S15P_S13e.gpkg.spkg/S1.13.ribosomal_protein_S15P_S13e/CONTENTS.json
singlem/data/S1.13.ribosomal_protein_S15P_S13e.gpkg.spkg/S1.13.ribosomal_protein_S15P_S13e/DNGNGWU00034_mingle_output_good_seqs.hmm
singlem/data/S1.13.ribosomal_protein_S15P_S13e.gpkg.spkg/S1.13.ribosomal_protein_S15P_S13e/graftm2Y_gKZ.faa
singlem/data/S1.13.ribosomal_protein_S15P_S13e.gpkg.spkg/S1.13.ribosomal_protein_S15P_S13e/graftmSIv4ri_search.hmm
singlem/data/S1.13.ribosomal_protein_S15P_S13e.gpkg.spkg/S1.13.ribosomal_protein_S15P_S13e/graftmh8KCUY_search.hmm
singlem/data/S1.13.ribosomal_protein_S15P_S13e.gpkg.spkg/S1.13.ribosomal_protein_S15P_S13e/4.20.ribosomal_protein_S15P_S13e_final.gpkg.refpkg/4.tre
singlem/data/S1.13.ribosomal_protein_S15P_S13e.gpkg.spkg/S1.13.ribosomal_protein_S15P_S13e/4.20.ribosomal_protein_S15P_S13e_final.gpkg.refpkg/4.tre.log
singlem/data/S1.13.ribosomal_protein_S15P_S13e.gpkg.spkg/S1.13.ribosomal_protein_S15P_S13e/4.20.ribosomal_protein_S15P_S13e_final.gpkg.refpkg/4_deduplicated_aligned.fasta
singlem/data/S1.13.ribosomal_protein_S15P_S13e.gpkg.spkg/S1.13.ribosomal_protein_S15P_S13e/4.20.ribosomal_protein_S15P_S13e_final.gpkg.refpkg/4_seqinfo.csv
singlem/data/S1.13.ribosomal_protein_S15P_S13e.gpkg.spkg/S1.13.ribosomal_protein_S15P_S13e/4.20.ribosomal_protein_S15P_S13e_final.gpkg.refpkg/4_taxonomy.csv
singlem/data/S1.13.ribosomal_protein_S15P_S13e.gpkg.spkg/S1.13.ribosomal_protein_S15P_S13e/4.20.ribosomal_protein_S15P_S13e_final.gpkg.refpkg/CONTENTS.json
singlem/data/S1.13.ribosomal_protein_S15P_S13e.gpkg.spkg/S1.13.ribosomal_protein_S15P_S13e/4.20.ribosomal_protein_S15P_S13e_final.gpkg.refpkg/phylo_modelo4kyet.json
singlem/data/S1.13.ribosomal_protein_S15P_S13e.gpkg.spkg/S1.13.ribosomal_protein_S15P_S13e/4.20.ribosomal_protein_S15P_S13e_final.gpkg.refpkg/treeqXXVKV.tre
singlem/data/S1.14.ribosomal_protein_S19_rpsS.gpkg.spkg/CONTENTS.json
singlem/data/S1.14.ribosomal_protein_S19_rpsS.gpkg.spkg/S1.14.ribosomal_protein_S19_rpsS/4.dmnd
singlem/data/S1.14.ribosomal_protein_S19_rpsS.gpkg.spkg/S1.14.ribosomal_protein_S19_rpsS/CONTENTS.json
singlem/data/S1.14.ribosomal_protein_S19_rpsS.gpkg.spkg/S1.14.ribosomal_protein_S19_rpsS/DNGNGWU00016_mingle_output_good_seqs.hmm
singlem/data/S1.14.ribosomal_protein_S19_rpsS.gpkg.spkg/S1.14.ribosomal_protein_S19_rpsS/graftm5WU6Uq_search.hmm
singlem/data/S1.14.ribosomal_protein_S19_rpsS.gpkg.spkg/S1.14.ribosomal_protein_S19_rpsS/graftm7uVKy7.faa
singlem/data/S1.14.ribosomal_protein_S19_rpsS.gpkg.spkg/S1.14.ribosomal_protein_S19_rpsS/graftmSHqOh3_search.hmm
singlem/data/S1.14.ribosomal_protein_S19_rpsS.gpkg.spkg/S1.14.ribosomal_protein_S19_rpsS/4.21.ribosomal_protein_S19_rpsS_final.gpkg.refpkg/4.tre
singlem/data/S1.14.ribosomal_protein_S19_rpsS.gpkg.spkg/S1.14.ribosomal_protein_S19_rpsS/4.21.ribosomal_protein_S19_rpsS_final.gpkg.refpkg/4.tre.log
singlem/data/S1.14.ribosomal_protein_S19_rpsS.gpkg.spkg/S1.14.ribosomal_protein_S19_rpsS/4.21.ribosomal_protein_S19_rpsS_final.gpkg.refpkg/4_deduplicated_aligned.fasta
singlem/data/S1.14.ribosomal_protein_S19_rpsS.gpkg.spkg/S1.14.ribosomal_protein_S19_rpsS/4.21.ribosomal_protein_S19_rpsS_final.gpkg.refpkg/4_seqinfo.csv
singlem/data/S1.14.ribosomal_protein_S19_rpsS.gpkg.spkg/S1.14.ribosomal_protein_S19_rpsS/4.21.ribosomal_protein_S19_rpsS_final.gpkg.refpkg/4_taxonomy.csv
singlem/data/S1.14.ribosomal_protein_S19_rpsS.gpkg.spkg/S1.14.ribosomal_protein_S19_rpsS/4.21.ribosomal_protein_S19_rpsS_final.gpkg.refpkg/CONTENTS.json
singlem/data/S1.14.ribosomal_protein_S19_rpsS.gpkg.spkg/S1.14.ribosomal_protein_S19_rpsS/4.21.ribosomal_protein_S19_rpsS_final.gpkg.refpkg/phylo_modelTaEMho.json
singlem/data/S1.14.ribosomal_protein_S19_rpsS.gpkg.spkg/S1.14.ribosomal_protein_S19_rpsS/4.21.ribosomal_protein_S19_rpsS_final.gpkg.refpkg/treeD8LLld.tre
singlem/data/S1.2.ribosomal_protein_L3_rplC.gpkg.spkg/CONTENTS.json
singlem/data/S1.2.ribosomal_protein_L3_rplC.gpkg.spkg/S1.2.ribosomal_protein_L3_rplC/4.dmnd
singlem/data/S1.2.ribosomal_protein_L3_rplC.gpkg.spkg/S1.2.ribosomal_protein_L3_rplC/CONTENTS.json
singlem/data/S1.2.ribosomal_protein_L3_rplC.gpkg.spkg/S1.2.ribosomal_protein_L3_rplC/DNGNGWU00012_mingle_output_good_seqs.hmm
singlem/data/S1.2.ribosomal_protein_L3_rplC.gpkg.spkg/S1.2.ribosomal_protein_L3_rplC/graftmID8t_I_search.hmm
singlem/data/S1.2.ribosomal_protein_L3_rplC.gpkg.spkg/S1.2.ribosomal_protein_L3_rplC/graftm_VEYiP.faa
singlem/data/S1.2.ribosomal_protein_L3_rplC.gpkg.spkg/S1.2.ribosomal_protein_L3_rplC/graftmeZ00Qg_search.hmm
singlem/data/S1.2.ribosomal_protein_L3_rplC.gpkg.spkg/S1.2.ribosomal_protein_L3_rplC/4.08.ribosomal_protein_L3_rplC_final.gpkg.refpkg/4.tre
singlem/data/S1.2.ribosomal_protein_L3_rplC.gpkg.spkg/S1.2.ribosomal_protein_L3_rplC/4.08.ribosomal_protein_L3_rplC_final.gpkg.refpkg/4.tre.log
singlem/data/S1.2.ribosomal_protein_L3_rplC.gpkg.spkg/S1.2.ribosomal_protein_L3_rplC/4.08.ribosomal_protein_L3_rplC_final.gpkg.refpkg/4_deduplicated_aligned.fasta
singlem/data/S1.2.ribosomal_protein_L3_rplC.gpkg.spkg/S1.2.ribosomal_protein_L3_rplC/4.08.ribosomal_protein_L3_rplC_final.gpkg.refpkg/4_seqinfo.csv
singlem/data/S1.2.ribosomal_protein_L3_rplC.gpkg.spkg/S1.2.ribosomal_protein_L3_rplC/4.08.ribosomal_protein_L3_rplC_final.gpkg.refpkg/4_taxonomy.csv
singlem/data/S1.2.ribosomal_protein_L3_rplC.gpkg.spkg/S1.2.ribosomal_protein_L3_rplC/4.08.ribosomal_protein_L3_rplC_final.gpkg.refpkg/CONTENTS.json
singlem/data/S1.2.ribosomal_protein_L3_rplC.gpkg.spkg/S1.2.ribosomal_protein_L3_rplC/4.08.ribosomal_protein_L3_rplC_final.gpkg.refpkg/phylo_modeltn6nXl.json
singlem/data/S1.2.ribosomal_protein_L3_rplC.gpkg.spkg/S1.2.ribosomal_protein_L3_rplC/4.08.ribosomal_protein_L3_rplC_final.gpkg.refpkg/treeuMje7j.tre
singlem/data/S1.3.ribosomal_protein_L5_rplE.gpkg.spkg/CONTENTS.json
singlem/data/S1.3.ribosomal_protein_L5_rplE.gpkg.spkg/S1.3.ribosomal_protein_L5_rplE/4.09.ribosomal_protein_L5_rplE_final_sequences.faa
singlem/data/S1.3.ribosomal_protein_L5_rplE.gpkg.spkg/S1.3.ribosomal_protein_L5_rplE/4.dmnd
singlem/data/S1.3.ribosomal_protein_L5_rplE.gpkg.spkg/S1.3.ribosomal_protein_L5_rplE/CONTENTS.json
singlem/data/S1.3.ribosomal_protein_L5_rplE.gpkg.spkg/S1.3.ribosomal_protein_L5_rplE/DNGNGWU00025_mingle_output_good_seqs.hmm
singlem/data/S1.3.ribosomal_protein_L5_rplE.gpkg.spkg/S1.3.ribosomal_protein_L5_rplE/graftmFIm7K0_search.hmm
singlem/data/S1.3.ribosomal_protein_L5_rplE.gpkg.spkg/S1.3.ribosomal_protein_L5_rplE/graftmMH5eE7_search.hmm
singlem/data/S1.3.ribosomal_protein_L5_rplE.gpkg.spkg/S1.3.ribosomal_protein_L5_rplE/4.09.ribosomal_protein_L5_rplE_final.gpkg.refpkg/4.tre
singlem/data/S1.3.ribosomal_protein_L5_rplE.gpkg.spkg/S1.3.ribosomal_protein_L5_rplE/4.09.ribosomal_protein_L5_rplE_final.gpkg.refpkg/4.tre.log
singlem/data/S1.3.ribosomal_protein_L5_rplE.gpkg.spkg/S1.3.ribosomal_protein_L5_rplE/4.09.ribosomal_protein_L5_rplE_final.gpkg.refpkg/4_deduplicated_aligned.fasta
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test/data/4.12.22seqs.spkg/4.12.22seqs/graftmsR8moo_search.hmm
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test/data/61_otus.v3.gpkg.length10.spkg/CONTENTS.json
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test/data/61_otus.v3.gpkg.length10.spkg/61_otus.v3/graftm7vJ9PD_search.hmm
test/data/61_otus.v3.gpkg.length10.spkg/61_otus.v3/singlem_package_creatorSI3Y28.fasta
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test/data/appraise_example/ERR1700920.assembly.otu_table.csv
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test/data/appraise_example/ERR1700920.reads.otu_table.csv
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test/data/appraise_example2/SRR5040536.reads.long_sample_names.otu_table.csv
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test/data/b.sdb/CONTENTS.json
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