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sphinx/source/StepSize.rst
sphinx/source/TimeDep.rst
sphinx/source/TransData.rst
sphinx/source/TrimerDynamics.rst
sphinx/source/TrimerEquil.rst
sphinx/source/conf.py
sphinx/source/dynamics.rst
sphinx/source/equil.rst
sphinx/source/index.rst
sphinx/source/molecule.rst
src/voro
src/sdanalysis/StepSize.py
src/sdanalysis/__init__.py
src/sdanalysis/_order.cpp
src/sdanalysis/_order.pyx
src/sdanalysis/dynamics.py
src/sdanalysis/frame.py
src/sdanalysis/main.py
src/sdanalysis/math_helper.c
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src/sdanalysis/math_util.pxd
src/sdanalysis/math_util.pyx
src/sdanalysis/molecules.py
src/sdanalysis/order.py
src/sdanalysis/params.py
src/sdanalysis/read.py
src/sdanalysis/relaxation.py
src/sdanalysis/run_analysis.py
src/sdanalysis/thermodynamics.py
src/sdanalysis/util.py
src/sdanalysis/version.py
src/sdanalysis.egg-info/PKG-INFO
src/sdanalysis.egg-info/SOURCES.txt
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src/sdanalysis.egg-info/entry_points.txt
src/sdanalysis.egg-info/requires.txt
src/sdanalysis.egg-info/top_level.txt
src/sdanalysis/figures/__init__.py
src/sdanalysis/figures/configuration.py
src/sdanalysis/figures/interactive_config.py
src/sdanalysis/figures/thermodynamics.py
src/sdanalysis/models/dt-Trimer-model.pkl
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src/voro/cell.hh
src/voro/cmd_line.cc
src/voro/common.cc
src/voro/common.hh
src/voro/config.hh
src/voro/container.cc
src/voro/container.hh
src/voro/container_prd.cc
src/voro/container_prd.hh
src/voro/pre_container.cc
src/voro/pre_container.hh
src/voro/rad_option.hh
src/voro/unitcell.cc
src/voro/unitcell.hh
src/voro/v_base.cc
src/voro/v_base.hh
src/voro/v_base_wl.cc
src/voro/v_compute.cc
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src/voro/voro++.cc
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src/voro/worklist.hh
src/voro/worklist_gen.pl
test/__init__.py
test/argparse_test.py
test/bokeh_test.py
test/dynamics_test.py
test/figures_test.py
test/molecule_test.py
test/order_test.py
test/params_test.py
test/read_test.py
test/relaxation_test.py
test/sdanalysis_test.py
test/stepsize_test.py
test/data/short-time-variance.lammpstrj
test/data/thermo-Trimer-P1.00-T0.30-I1.00-pg.log
test/data/trajectory-Trimer-P13.50-T3.00.gsd