Metadata-Version: 2.1
Name: autoclasswrapper
Version: 0.1.13
Summary: Simple Python wrapper for autoclass-c.
Home-page: https://github.com/pierrepo/autoclasswrapper
Author: Pierre Poulain
Author-email: pierre.poulain@cupnet.net
License: BSD 3-Clause License
Description: # Python wrapper for AutoClass clustering
        
        [![License: BSD](https://img.shields.io/badge/License-BSD-blue.svg)](https://opensource.org/licenses/BSD-3-Clause)   [![autoclasswrapper version on PyPI](https://badge.fury.io/py/autoclasswrapper.svg)](https://pypi.python.org/pypi/autoclasswrapper)   [![Build Status](https://travis-ci.org/pierrepo/autoclasswrapper.svg?branch=master)](https://travis-ci.org/pierrepo/autoclasswrapper)
        
        
        
        AutoClass is an unsupervised Bayesian classification system.
        
        [AutoClass C](https://ti.arc.nasa.gov/tech/rse/synthesis-projects-applications/autoclass/autoclass-c/) is an implementation of the AutoClass algorithm made by the NASA.
        
        autoclasswrapper is a Python wrapper to ease the use of Autoclass C.
        
        ## Quick install
        ```
        $ python3 -m pip install autoclasswrapper
        ```
        or
        ```
        $ pipenv --three
        $ pipenv install autoclasswrapper
        ```
        
        **Dev**
        
        **0.0.13**
        - print Exception content for check_data_type()
        - output class probability for every gene/protein
        - simplify the calculation of cluster stats
        - class/cluster numbering starts at 1 (0-based in autoclass output)
        - add dendrogram of classes
        - add reproducible run option (test only)
        - add tests for Input() class
        - add tests for Output() class
        - add tests for Run() class
        
        **0.1.12**
        - update write_cluster_stats() methods with mean/std column
        - output data+clusters in clust_data.tsv
        
        **0.1.11**
        - add nohup while running autoclass script
        
        **0.1.10**
        - search_autoclass_in_path() returns the PATH
        
        **0.1.9**
        - check autoclass-c executable is in PATH
        - building and running script are in Run() class
        
        **0.1.8**
        - add env in Popen()
        
        **0.1.7**
        - add missing dependencies
        
        **0.1.6**
        - move distribution package to bdist_wheel
        
        **0.1.5**
        - move config options to setup.cfg
        
        **0.1.4**
        - add MANIFEST.in
        
        **0.1.3**
        - remove tests from Python package
        
        **0.1.2**
        - add Markdown support for README description
        
        BSD 3-Clause License
        
        Copyright (c) 2018, Pierre Poulain
        All rights reserved.
        
        Redistribution and use in source and binary forms, with or without
        modification, are permitted provided that the following conditions are met:
        
        * Redistributions of source code must retain the above copyright notice, this
          list of conditions and the following disclaimer.
        
        * Redistributions in binary form must reproduce the above copyright notice,
          this list of conditions and the following disclaimer in the documentation
          and/or other materials provided with the distribution.
        
        * Neither the name of the copyright holder nor the names of its
          contributors may be used to endorse or promote products derived from
          this software without specific prior written permission.
        
        THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
        AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
        IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
        DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
        FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
        DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
        SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
        CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
        OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
        OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
        
        
Keywords: autoclass,clustering,proteins,genes
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Developers
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Natural Language :: English
Classifier: License :: OSI Approved :: BSD License
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Requires-Python: >=3.4
Description-Content-Type: text/markdown
