CODE_OF_CONDUCT.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
planemo/__init__.py
planemo/cli.py
planemo/config.py
planemo/galaxy_config.py
planemo/galaxy_run.py
planemo/galaxy_serve.py
planemo/galaxy_test.py
planemo/github_util.py
planemo/glob.py
planemo/io.py
planemo/lint.py
planemo/options.py
planemo/shed.py
planemo/shed_lint.py
planemo/templates.py
planemo/tool_builder.py
planemo/tool_lint.py
planemo/tools.py
planemo.egg-info/PKG-INFO
planemo.egg-info/SOURCES.txt
planemo.egg-info/dependency_links.txt
planemo.egg-info/entry_points.txt
planemo.egg-info/not-zip-safe
planemo.egg-info/requires.txt
planemo.egg-info/top_level.txt
planemo/commands/__init__.py
planemo/commands/cmd_brew.py
planemo/commands/cmd_brew_env.py
planemo/commands/cmd_brew_init.py
planemo/commands/cmd_config_init.py
planemo/commands/cmd_create_gist.py
planemo/commands/cmd_docker_build.py
planemo/commands/cmd_docker_shell.py
planemo/commands/cmd_lint.py
planemo/commands/cmd_normalize.py
planemo/commands/cmd_project_init.py
planemo/commands/cmd_serve.py
planemo/commands/cmd_share_test.py
planemo/commands/cmd_shed_create.py
planemo/commands/cmd_shed_diff.py
planemo/commands/cmd_shed_download.py
planemo/commands/cmd_shed_init.py
planemo/commands/cmd_shed_lint.py
planemo/commands/cmd_shed_upload.py
planemo/commands/cmd_syntax.py
planemo/commands/cmd_test.py
planemo/commands/cmd_tool_factory.py
planemo/commands/cmd_tool_init.py
planemo/commands/cmd_travis_before_install.py
planemo/commands/cmd_travis_init.py
planemo/linters/__init__.py
planemo/linters/xsd.py
planemo/reports/__init__.py
planemo/reports/build_report.py
planemo/xml/__init__.py
planemo/xml/validation.py
planemo/xml/xsd/repository_dependencies.xsd
planemo/xml/xsd/tool_dependencies.xsd
planemo/xml/xsd/tool/.git
planemo/xml/xsd/tool/.gitignore
planemo/xml/xsd/tool/.travis.yml
planemo/xml/xsd/tool/LICENSE
planemo/xml/xsd/tool/Makefile
planemo/xml/xsd/tool/README.md
planemo/xml/xsd/tool/citation.xsd
planemo/xml/xsd/tool/citations.xsd
planemo/xml/xsd/tool/galaxy.jxb
planemo/xml/xsd/tool/galaxy.xsd
planemo/xml/xsd/tool/test.sh
planemo/xml/xsd/tool/test.urls
planemo_ext/__init__.py
planemo_ext/galaxy/__init__.py
planemo_ext/galaxy/exceptions.py
planemo_ext/galaxy/eggs/__init__.py
planemo_ext/galaxy/tools/__init__.py
planemo_ext/galaxy/tools/lint.py
planemo_ext/galaxy/tools/loader.py
planemo_ext/galaxy/tools/loader_directory.py
planemo_ext/galaxy/tools/deps/__init__.py
planemo_ext/galaxy/tools/deps/brew_exts.py
planemo_ext/galaxy/tools/deps/brew_util.py
planemo_ext/galaxy/tools/deps/commands.py
planemo_ext/galaxy/tools/deps/containers.py
planemo_ext/galaxy/tools/deps/dependencies.py
planemo_ext/galaxy/tools/deps/docker_util.py
planemo_ext/galaxy/tools/deps/dockerfiles.py
planemo_ext/galaxy/tools/deps/requirements.py
planemo_ext/galaxy/tools/deps/resolvers/__init__.py
planemo_ext/galaxy/tools/deps/resolvers/brewed_tool_shed_packages.py
planemo_ext/galaxy/tools/deps/resolvers/galaxy_packages.py
planemo_ext/galaxy/tools/deps/resolvers/homebrew.py
planemo_ext/galaxy/tools/deps/resolvers/modules.py
planemo_ext/galaxy/tools/deps/resolvers/resolver_mixins.py
planemo_ext/galaxy/tools/deps/resolvers/tool_shed_packages.py
planemo_ext/galaxy/tools/linters/__init__.py
planemo_ext/galaxy/tools/linters/citations.py
planemo_ext/galaxy/tools/linters/command.py
planemo_ext/galaxy/tools/linters/help.py
planemo_ext/galaxy/tools/linters/inputs.py
planemo_ext/galaxy/tools/linters/outputs.py
planemo_ext/galaxy/tools/linters/stdio.py
planemo_ext/galaxy/tools/linters/tests.py
planemo_ext/galaxy/tools/linters/top_level.py
planemo_ext/galaxy/tools/linters/xml_order.py
planemo_ext/galaxy/tools/linters/xsd.py
planemo_ext/galaxy/tools/linters/xsd_util.py
planemo_ext/galaxy/util/__init__.py
planemo_ext/galaxy/util/bunch.py
planemo_ext/galaxy/util/directory_hash.py
planemo_ext/galaxy/util/odict.py
planemo_ext/galaxy/util/plugin_config.py
planemo_ext/galaxy/util/sleeper.py
planemo_ext/galaxy/util/submodules.py
planemo_ext/tool_factory_2/LICENSE
planemo_ext/tool_factory_2/getlocalrpackages.py
planemo_ext/tool_factory_2/rgToolFactory2.py
planemo_ext/tool_factory_2/rgToolFactory2.xml