.gitignore
.gitmodules
LICENSE
README.md
requirements.txt
setup.cfg
setup.py
doc/Makefile
doc/make.bat
doc/source/classhierarchy.rst
doc/source/conf.py
doc/source/designphilosophy.rst
doc/source/examples.rst
doc/source/index.rst
doc/source/origins.rst
doc/source/_static/classhierarchy_uml.dia
doc/source/classes/coordinates.rst
doc/source/classes/engine.rst
doc/source/classes/environment.rst
doc/source/classes/forcefield.rst
doc/source/classes/indexgroups.rst
doc/source/classes/intermolecularinteractions.rst
doc/source/classes/mdp.rst
doc/source/classes/moleculetype.rst
doc/source/classes/results.rst
doc/source/classes/simulation.rst
doc/source/classes/system.rst
doc/source/classes/trajectory.rst
doc/source/classes/xvgfile.rst
recipe/bld.bat
recipe/build.sh
recipe/meta.yaml
src/gmxbatch/__init__.py
src/gmxbatch/indexgroups.py
src/gmxbatch/mdengine.py
src/gmxbatch/system.py
src/gmxbatch/templating.py
src/gmxbatch/trajectory.py
src/gmxbatch/xvgfile.py
src/gmxbatch.egg-info/PKG-INFO
src/gmxbatch.egg-info/SOURCES.txt
src/gmxbatch.egg-info/dependency_links.txt
src/gmxbatch.egg-info/entry_points.txt
src/gmxbatch.egg-info/not-zip-safe
src/gmxbatch.egg-info/requires.txt
src/gmxbatch.egg-info/top_level.txt
src/gmxbatch/conffiles/__init__.py
src/gmxbatch/conffiles/conffile.py
src/gmxbatch/environment/__init__.py
src/gmxbatch/environment/barostat.py
src/gmxbatch/environment/environment.py
src/gmxbatch/environment/thermostat.py
src/gmxbatch/forcefields/__init__.py
src/gmxbatch/forcefields/amber.py
src/gmxbatch/forcefields/charmm.py
src/gmxbatch/forcefields/forcefield.py
src/gmxbatch/forcefields/gromos.py
src/gmxbatch/intermolecularinteractions/__init__.py
src/gmxbatch/intermolecularinteractions/interaction.py
src/gmxbatch/intermolecularinteractions/intermolecularinteractions.py
src/gmxbatch/mdp/__init__.py
src/gmxbatch/mdp/mdp.py
src/gmxbatch/mdp/sections.py
src/gmxbatch/moleculetype/__init__.py
src/gmxbatch/moleculetype/atom.py
src/gmxbatch/moleculetype/moleculetype.py
src/gmxbatch/resource/topol.jinja2
src/gmxbatch/resource/mdp/barostat.jinja2
src/gmxbatch/resource/mdp/base.mdp.jinja2
src/gmxbatch/resource/mdp/constraints.jinja2
src/gmxbatch/resource/mdp/electrostatics.jinja2
src/gmxbatch/resource/mdp/neighboursearch.jinja2
src/gmxbatch/resource/mdp/outputcontrol.jinja2
src/gmxbatch/resource/mdp/runcontrol.jinja2
src/gmxbatch/resource/mdp/thermostat.jinja2
src/gmxbatch/resource/mdp/vanderwaals.jinja2
src/gmxbatch/resource/mdp/velocitygeneration.jinja2
src/gmxbatch/simulation/__init__.py
src/gmxbatch/simulation/results.py
src/gmxbatch/simulation/simulation.py
src/gmxbatch/topfilter/__init__.py
src/gmxbatch/topfilter/topologyfilter.py
src/gmxbatch/utilities/__init__.py
src/gmxbatch/utilities/top2itp.py
test/residuetypes.dat
test/xlateat.dat
test/meoh/meoh.gro
test/meoh/meoh.pse
test/meoh/test.py
test/moleculetypes/charmm/meoh.itp
test/moleculetypes/charmm/valxval.itp
test/struct_files/test.py