COPYING
MANIFEST.in
README
VERSION
setup.py
bin/blast2gff
bin/blastInfo
bin/blastReport
bin/fasta2gff
bin/fastaExtract
bin/fastaInfo
bin/fastaNfinder
bin/fastaSplitter
bin/moa
bin/moainit
bin/moaprompt
etc/config
etc/bash_completion.d/moa
lib/gnumake/__core.mk
lib/gnumake/__prepare.mk
lib/gnumake/core.mk
lib/gnumake/execute.mk
lib/gnumake/getPluginList.mk
lib/gnumake/prepare.mk
lib/gnumake/plugins/adhoc.mk
lib/gnumake/plugins/fileset.mk
lib/gnumake/plugins/info.mk
lib/gnumake/plugins/pack.mk
lib/gnumake/plugins/state.mk
lib/gnumake/plugins/test.mk
lib/gnumake/util/__gmsl
lib/gnumake/util/gmsl
lib/jinja2/command.snippet.rst.jinja2
lib/jinja2/plugin.index.rst.jinja2
lib/jinja2/plugin.rst.jinja2
lib/jinja2/template.help.jinja2
lib/jinja2/template.index.rst.jinja2
lib/jinja2/template.rst.jinja2
lib/python/moa/__init__.py
lib/python/moa/actor.py
lib/python/moa/commands.py
lib/python/moa/exceptions.py
lib/python/moa/job.py
lib/python/moa/jobConf.py
lib/python/moa/lock.py
lib/python/moa/logger.py
lib/python/moa/moajob.py
lib/python/moa/project.py
lib/python/moa/sysConf.py
lib/python/moa/template.py
lib/python/moa/ui.py
lib/python/moa/utils.py
lib/python/moa/version.py
lib/python/moa.egg-info/PKG-INFO
lib/python/moa.egg-info/SOURCES.txt
lib/python/moa.egg-info/dependency_links.txt
lib/python/moa.egg-info/requires.txt
lib/python/moa.egg-info/top_level.txt
lib/python/moa/backend/__init__.py
lib/python/moa/backend/gnumake.py
lib/python/moa/backend/nojob.py
lib/python/moa/backend/ruff.py
lib/python/moa/plugin/__init__.py
lib/python/moa/plugin/adhoc.py
lib/python/moa/plugin/configure.py
lib/python/moa/plugin/doc.py
lib/python/moa/plugin/extraCommands.py
lib/python/moa/plugin/fileset.py
lib/python/moa/plugin/help.py
lib/python/moa/plugin/info.py
lib/python/moa/plugin/lock.py
lib/python/moa/plugin/logger.py
lib/python/moa/plugin/logo.py
lib/python/moa/plugin/moaGit.py
lib/python/moa/plugin/moautil.py
lib/python/moa/plugin/newjob.py
lib/python/moa/plugin/parameterCheck.py
lib/python/moa/plugin/prompt.py
lib/python/moa/plugin/status.py
lib/python/moa/plugin/template.py
lib/python/moa/plugin/test.py
lib/python/moa/plugin/twit.py
lib/ruff/snippets.jinja2
share/test/reads_1.fq
share/test/reads_2.fq
share/test/test.fasta
template2/act_crunch.mk
template2/act_crunch.moa
template2/adhoc.mk
template2/adhoc.moa
template2/bamextract.mk
template2/bamextract.moa
template2/bartab.mk
template2/bartab.moa
template2/bfast_aln.jinja2
template2/bfast_aln.moa
template2/bfast_db.jinja2
template2/bfast_db.moa
template2/bidibebla.jinja2
template2/bidibebla.moa
template2/blast.jinja2
template2/blast.moa
template2/blastSingle.mk
template2/blastSingle.moa
template2/blastdb.mk
template2/blastdb.moa
template2/blat.mk
template2/blat.moa
template2/bowtie.jinja2
template2/bowtie.moa
template2/bowtie_pe.jinja2
template2/bowtie_pe.moa
template2/bowtie_se.jinja2
template2/bowtie_se.moa
template2/bowtiedb.jinja2
template2/bowtiedb.moa
template2/bwa_aln.jinja2
template2/bwa_aln.moa
template2/bwa_index.jinja2
template2/bwa_index.moa
template2/bwa_sampe.jinja2
template2/bwa_sampe.moa
template2/bwa_samse.jinja2
template2/bwa_samse.moa
template2/cleanFasta.mk
template2/cleanFasta.moa
template2/clustalgroup.mk
template2/clustalgroup.moa
template2/clustalpair.mk
template2/clustalpair.moa
template2/clustalw.mk
template2/clustalw.moa
template2/concatenate.mk
template2/concatenate.moa
template2/create.gbrowse.db.mk
template2/create.gbrowse.db.moa
template2/dottup.mk
template2/dottup.moa
template2/dottupSelf.mk
template2/dottupSelf.moa
template2/empty.jinja2
template2/empty.moa
template2/fasta2gff.mk
template2/fasta2gff.moa
template2/fastx_clipper.jinja2
template2/fastx_clipper.moa
template2/fastx_qual_stats.jinja2
template2/fastx_qual_stats.moa
template2/gather.mk
template2/gather.moa
template2/genemarks.jinja2
template2/genemarks.moa
template2/getorf.mk
template2/getorf.moa
template2/glimmer3.mk
template2/glimmer3.moa
template2/gmap.jinja2
template2/gmap.mk
template2/gmap.moa
template2/gmapdb.jinja2
template2/gmapdb.moa
template2/gsMapper.mk
template2/gsMapper.moa
template2/h_blast.mk
template2/h_blast.moa
template2/kanga.jinja2
template2/kanga.moa
template2/kangar_pe.jinja2
template2/kangar_pe.moa
template2/kangar_se.jinja2
template2/kangar_se.moa
template2/kangax.jinja2
template2/kangax.moa
template2/lftp.mk
template2/lftp.moa
template2/map.jinja2
template2/map.moa
template2/maq_fasta2bfa.mk
template2/maq_fasta2bfa.moa
template2/maq_fastq2bfq.mk
template2/maq_fastq2bfq.moa
template2/maq_match_pair.mk
template2/maq_match_pair.moa
template2/maq_pe.jinja2
template2/maq_pe.moa
template2/maq_se.jinja2
template2/maq_se.moa
template2/moatest.mk
template2/moatest.moa
template2/mummer.mk
template2/mummer.moa
template2/ncbi.mk
template2/ncbi.moa
template2/newbler.mk
template2/newbler.moa
template2/nstretch.mk
template2/nstretch.moa
template2/orthomcl.jinja2
template2/orthomcl.moa
template2/pregap.mk
template2/pregap.moa
template2/project.mk
template2/project.moa
template2/r.mk
template2/r.moa
template2/repeatmasker.mk
template2/repeatmasker.moa
template2/revseq.mk
template2/revseq.moa
template2/sam2bam.mk
template2/sam2bam.moa
template2/samtools_pileup.jinja2
template2/samtools_pileup.moa
template2/scaffolder.mk
template2/scaffolder.moa
template2/sffinfo.mk
template2/sffinfo.moa
template2/simple.jinja2
template2/simple.moa
template2/soap_aln_pe.jinja2
template2/soap_aln_pe.moa
template2/soap_aln_se.jinja2
template2/soap_aln_se.moa
template2/soapdb.jinja2
template2/soapdb.mk
template2/soapdb.moa
template2/statsidx.jinja2
template2/statsidx.moa
template2/unittest.jinja2
template2/unittest.moa
template2/varscan.mk
template2/varscan.moa
template2/vmatch.mk
template2/vmatch.moa
template2/vmatchdb.mk
template2/vmatchdb.moa
template2/vpcr.mk
template2/vpcr.moa
template2/vpcr_list.mk
template2/vpcr_list.moa
template2/emboss/revseq.mk
template2/emboss/revseq.moa