README.md
pyproject.toml
setup.py
janis_bioinformatics/__init__.py
janis_bioinformatics/__meta__.py
janis_bioinformatics/data_types/__init__.py
janis_bioinformatics/data_types/bai.py
janis_bioinformatics/data_types/bam.py
janis_bioinformatics/data_types/bed.py
janis_bioinformatics/data_types/crai.py
janis_bioinformatics/data_types/cram.py
janis_bioinformatics/data_types/fasta.py
janis_bioinformatics/data_types/fastq.py
janis_bioinformatics/data_types/sam.py
janis_bioinformatics/data_types/tabix.py
janis_bioinformatics/data_types/vcf.py
janis_bioinformatics/tools/__init__.py
janis_bioinformatics/tools/bioinformaticstoolbase.py
janis_bioinformatics/tools/babrahambioinformatics/__init__.py
janis_bioinformatics/tools/babrahambioinformatics/fastqc/__init__.py
janis_bioinformatics/tools/babrahambioinformatics/fastqc/base.py
janis_bioinformatics/tools/babrahambioinformatics/fastqc/basesingle.py
janis_bioinformatics/tools/babrahambioinformatics/fastqc/versions.py
janis_bioinformatics/tools/bcftools/__init__.py
janis_bioinformatics/tools/bcftools/bcftools_1_5.py
janis_bioinformatics/tools/bcftools/bcftools_1_9.py
janis_bioinformatics/tools/bcftools/bcftoolstoolbase.py
janis_bioinformatics/tools/bcftools/annotate/__init__.py
janis_bioinformatics/tools/bcftools/annotate/base.py
janis_bioinformatics/tools/bcftools/annotate/versions.py
janis_bioinformatics/tools/bcftools/concat/__init__.py
janis_bioinformatics/tools/bcftools/concat/base.py
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janis_bioinformatics/tools/bcftools/index/__init__.py
janis_bioinformatics/tools/bcftools/index/base.py
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janis_bioinformatics/tools/bcftools/norm/__init__.py
janis_bioinformatics/tools/bcftools/norm/base.py
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janis_bioinformatics/tools/bcftools/sort/__init__.py
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janis_bioinformatics/tools/bcftools/view/__init__.py
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janis_bioinformatics/tools/bedtools/__init__.py
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janis_bioinformatics/tools/bedtools/genomecoveragebed/__init__.py
janis_bioinformatics/tools/bedtools/genomecoveragebed/base.py
janis_bioinformatics/tools/bedtools/genomecoveragebed/versions.py
janis_bioinformatics/tools/bedtools/intersectbed/__init__.py
janis_bioinformatics/tools/bedtools/intersectbed/base.py
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janis_bioinformatics/tools/biobambam/__init__.py
janis_bioinformatics/tools/biobambam/versions.py
janis_bioinformatics/tools/biobambam/bamsormadup/__init__.py
janis_bioinformatics/tools/biobambam/bamsormadup/base.py
janis_bioinformatics/tools/biobambam/bamsormadup/versions.py
janis_bioinformatics/tools/bwa/__init__.py
janis_bioinformatics/tools/bwa/versions.py
janis_bioinformatics/tools/bwa/index/__init__.py
janis_bioinformatics/tools/bwa/index/base.py
janis_bioinformatics/tools/bwa/index/versions.py
janis_bioinformatics/tools/bwa/mem/__init__.py
janis_bioinformatics/tools/bwa/mem/base.py
janis_bioinformatics/tools/bwa/mem/versions.py
janis_bioinformatics/tools/cellranger/__init__.py
janis_bioinformatics/tools/cellranger/cellranger.py
janis_bioinformatics/tools/cellranger/mkfastq/__init__.py
janis_bioinformatics/tools/cellranger/mkfastq/base.py
janis_bioinformatics/tools/cellranger/mkfastq/versions.py
janis_bioinformatics/tools/clonefinder/__init__.py
janis_bioinformatics/tools/clonefinder/base.py
janis_bioinformatics/tools/clonefinder/versions.py
janis_bioinformatics/tools/common/__init__.py
janis_bioinformatics/tools/common/bwaaligner.py
janis_bioinformatics/tools/common/bwamem_samtoolsview.py
janis_bioinformatics/tools/common/concat_strelkasomaticvcf.py
janis_bioinformatics/tools/common/filtervardictsomaticvcf.py
janis_bioinformatics/tools/common/gatkbasecalbam.py
janis_bioinformatics/tools/common/gatkbasecalbam_4_1_2.py
janis_bioinformatics/tools/common/indexfasta.py
janis_bioinformatics/tools/common/splitmultiallele.py
janis_bioinformatics/tools/common/splitmultiallele_normalistvcf.py
janis_bioinformatics/tools/common/mergeandmark/__init__.py
janis_bioinformatics/tools/common/mergeandmark/mergeandmark_4_0.py
janis_bioinformatics/tools/common/mergeandmark/mergeandmark_4_1_2.py
janis_bioinformatics/tools/common/mergeandmark/mergeandmark_4_1_3.py
janis_bioinformatics/tools/cutadapt/__init__.py
janis_bioinformatics/tools/cutadapt/base_1.py
janis_bioinformatics/tools/cutadapt/base_2.py
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janis_bioinformatics/tools/dawson/__init__.py
janis_bioinformatics/tools/dawson/dawsontoolkit_0_1.py
janis_bioinformatics/tools/dawson/dawsontoolkitlatest.py
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janis_bioinformatics/tools/dawson/callsomaticfreebayes/base.py
janis_bioinformatics/tools/dawson/callsomaticfreebayes/callsomaticfreebayes_0_1.py
janis_bioinformatics/tools/dawson/callsomaticfreebayes/latest.py
janis_bioinformatics/tools/dawson/createcallregions/__init__.py
janis_bioinformatics/tools/dawson/createcallregions/base.py
janis_bioinformatics/tools/dawson/refilterstrelka2calls/__init__.py
janis_bioinformatics/tools/dawson/refilterstrelka2calls/base.py
janis_bioinformatics/tools/dawson/refilterstrelka2calls/latest.py
janis_bioinformatics/tools/dawson/refilterstrelka2calls/refilterstrelka2calls_0_1.py
janis_bioinformatics/tools/dawson/workflows/__init__.py
janis_bioinformatics/tools/dawson/workflows/variantcalling/__init__.py
janis_bioinformatics/tools/dawson/workflows/variantcalling/multisample/__init__.py
janis_bioinformatics/tools/dawson/workflows/variantcalling/multisample/freebayes/__init__.py
janis_bioinformatics/tools/dawson/workflows/variantcalling/multisample/freebayes/freebayessomaticworkflow.py
janis_bioinformatics/tools/dawson/workflows/variantcalling/multisample/freebayes/freebayessomaticworkflow_cram.py
janis_bioinformatics/tools/dawson/workflows/variantcalling/multisample/mutect2/__init__.py
janis_bioinformatics/tools/dawson/workflows/variantcalling/multisample/mutect2/mutect2jointsomaticworkflow.py
janis_bioinformatics/tools/dawson/workflows/variantcalling/multisample/mutect2/mutect2jointsomaticworkflow_cram.py
janis_bioinformatics/tools/dawson/workflows/variantcalling/multisample/strelka2/__init__.py
janis_bioinformatics/tools/dawson/workflows/variantcalling/multisample/strelka2/strelka2passworkflow.py
janis_bioinformatics/tools/dawson/workflows/variantcalling/multisample/strelka2/strelka2passworkflow_cram.py
janis_bioinformatics/tools/dawson/workflows/variantcalling/multisample/strelka2/steps/__init__.py
janis_bioinformatics/tools/dawson/workflows/variantcalling/multisample/strelka2/steps/strelka2passanalysisstep1.py
janis_bioinformatics/tools/dawson/workflows/variantcalling/multisample/strelka2/steps/strelka2passanalysisstep1_cram.py
janis_bioinformatics/tools/dawson/workflows/variantcalling/multisample/strelka2/steps/strelka2passanalysisstep2.py
janis_bioinformatics/tools/dawson/workflows/variantcalling/multisample/strelka2/steps/strelka2passanalysisstep2_cram.py
janis_bioinformatics/tools/ensembl/__init__.py
janis_bioinformatics/tools/ensembl/filtervep/__init__.py
janis_bioinformatics/tools/ensembl/filtervep/base.py
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janis_bioinformatics/tools/ensembl/vep/v98_3/database.py
janis_bioinformatics/tools/facets/__init__.py
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janis_bioinformatics/tools/facets/facets_0_5_14_1.py
janis_bioinformatics/tools/facets/facets_0_5_14_2.py
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janis_bioinformatics/tools/freebayes/__init__.py
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janis_bioinformatics/tools/gatk3/__init__.py
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janis_bioinformatics/tools/pmac/addBamStatsSomaticWorkflow.py
janis_bioinformatics/tools/pmac/allsortsWorkflow.py
janis_bioinformatics/tools/pmac/annotateDepthOfCoverageWorkflow.py
janis_bioinformatics/tools/pmac/generatebedtoolscoveragegenomefile.py
janis_bioinformatics/tools/pmac/molpathGermlineWorkflow.py
janis_bioinformatics/tools/pmac/molpathTumorOnlyWorkflow.py
janis_bioinformatics/tools/pmac/performanceSummaryGenomeWorkflow.py
janis_bioinformatics/tools/pmac/performanceSummaryTargetedWorkflow.py
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janis_bioinformatics/tools/pmac/addbamstats/__init__.py
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