Metadata-Version: 2.1
Name: scanoramaCT
Version: 1.1.1
Summary: An adapted version of the Scanorama package by Brian Hie, Bryan Bryson, and Bonnie Berger for application to CytoTRACE.
Home-page: UNKNOWN
Author: Gunsagar Gulati
Author-email: gunsagargulati@gmail.com
License: UNKNOWN
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
Requires-Dist: annoy (>=1.11.5)
Requires-Dist: fbpca (>=1.0)
Requires-Dist: geosketch (>=1.0)
Requires-Dist: intervaltree (==2.1.0)
Requires-Dist: matplotlib (>=2.0.2)
Requires-Dist: numpy (>=1.12.0)
Requires-Dist: scipy (>=1.0.0)
Requires-Dist: scikit-learn (>=0.20rc1)

# Scanorma for CytoTRACE (ScanoramaCT)

`scanoramaCT.py` is an adapted version of the original <a href="https://github.com/brianhie/scanorama">Scanorama code</a> for application to CytoTRACE. The code has been modified to adjust the aligned gene count vectors using Gaussian kernel normalization. CytoTRACE is then applied to the Scanorama-adjusted gene counts and expression matrix. 

`scanoramaCT` is now available within the CytoTRACE codebase and web framework (<a href="https://github.com/gunsagargulati/CytoTRACE">CytoTRACE GitHub</a>). 


