Metadata-Version: 2.1
Name: immunopipe
Version: 0.11.1
Summary: A pipeline for integrative analysis for scTCR- and scRNA-seq data
Home-page: https://github.com/pwwang/immunopipe
License: GNU General Public License v3.0
Author: pwwang
Author-email: pwwang@pwwang.com
Requires-Python: >=3.8,<4.0
Classifier: License :: Other/Proprietary License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Provides-Extra: diagram
Provides-Extra: runinfo
Requires-Dist: biopipen (>=0.22.8,<0.23.0)
Requires-Dist: pipen-diagram (>=0.9,<0.10) ; extra == "diagram"
Requires-Dist: pipen-runinfo (>=0.4,<0.5) ; extra == "runinfo"
Project-URL: Repository, https://github.com/pwwang/immunopipe
Description-Content-Type: text/markdown

<p align="center">
  <img height="120" style="height: 120px" src="https://github.com/pwwang/immunopipe/blob/dev/docs/logo.png?raw=true">
</p>
<p align="center">Integrative analysis for single-cell RNA sequencing and single-cell TCR sequencing data</p>
<hr />

`immunopipe` is a pipeline based on [`pipen`](https://github.com/pwwang/pipen) framework. It includes a set of processes for scTCR- and scRNA-seq data analysis in `R`, `python` and `bash`. The pipeline is designed to be flexible and configurable.

![immunopipe](https://github.com/pwwang/immunopipe/blob/dev/docs/immunopipe.flowchart.png?raw=true)

## Documentaion

[https://pwwang.github.io/immunopipe](https://pwwang.github.io/immunopipe)

## Proposing more analyses

If you have any suggestions for more analyses, please feel free to open an issue [here](https://github.com/pwwang/immunopipe/issues/new)

## Example

[https://github.com/pwwang/immunopipe-example](https://github.com/pwwang/immunopipe-example)

