LICENSE
MANIFEST.in
README.rst
pyproject.toml
requirements.txt
setup.py
mdapy/__init__.py
mdapy/__main__.py
mdapy/ackland_jones_analysis.py
mdapy/box.py
mdapy/cell_opt.py
mdapy/centro_symmetry_parameter.py
mdapy/cluser_analysis.py
mdapy/common_neighbor_analysis.py
mdapy/common_neighbor_parameter.py
mdapy/create_polycrystalline.py
mdapy/dft2nepxyz.py
mdapy/eam_average.py
mdapy/eam_generate.py
mdapy/entropy.py
mdapy/identify_SFs_TBs.py
mdapy/lattice_maker.py
mdapy/lindemann_parameter.py
mdapy/load_save_data.py
mdapy/main.py
mdapy/mean_squared_displacement.py
mdapy/nearest_neighbor.py
mdapy/neighbor.py
mdapy/pair_distribution.py
mdapy/perturb_model.py
mdapy/phonon.py
mdapy/pigz.py
mdapy/plotset.py
mdapy/polyhedral_template_matching.py
mdapy/potential.py
mdapy/replicate.py
mdapy/spatial_binning.py
mdapy/steinhardt_bond_orientation.py
mdapy/system.py
mdapy/temperature.py
mdapy/tool_function.py
mdapy/visualize.py
mdapy/void_distribution.py
mdapy/voronoi_analysis.py
mdapy/warren_cowley_parameter.py
mdapy.egg-info/PKG-INFO
mdapy.egg-info/SOURCES.txt
mdapy.egg-info/dependency_links.txt
mdapy.egg-info/entry_points.txt
mdapy.egg-info/not-zip-safe
mdapy.egg-info/requires.txt
mdapy.egg-info/top_level.txt
mdapy/cluster/_cluster.cpp
mdapy/neigh/_neigh.cpp
mdapy/nep/_nep.cpp
mdapy/ptm/_ptm.cpp
mdapy/rdf/_rdf.cpp
mdapy/voronoi/_voro.cpp
mdapy/cluster/_cluster.cpp
mdapy/neigh/_neigh.cpp
mdapy/nep/_nep.cpp
mdapy/ptm/_ptm.cpp
mdapy/rdf/_rdf.cpp
mdapy/voronoi/_voro.cpp
thirdparty/nep/nep.cpp
thirdparty/ptm/ptm_alloy_types.cpp
thirdparty/ptm/ptm_canonical_coloured.cpp
thirdparty/ptm/ptm_constants.cpp
thirdparty/ptm/ptm_convex_hull_incremental.cpp
thirdparty/ptm/ptm_deformation_gradient.cpp
thirdparty/ptm/ptm_graph_data.cpp
thirdparty/ptm/ptm_graph_tools.cpp
thirdparty/ptm/ptm_index.cpp
thirdparty/ptm/ptm_initialize_data.cpp
thirdparty/ptm/ptm_neighbour_ordering.cpp
thirdparty/ptm/ptm_normalize_vertices.cpp
thirdparty/ptm/ptm_polar.cpp
thirdparty/ptm/ptm_quat.cpp
thirdparty/ptm/ptm_structure_matcher.cpp
thirdparty/ptm/ptm_voronoi_cell.cpp
thirdparty/voro++/voro++.cc
thirdparty/nep/LICENSE
thirdparty/nep/dftd3para.h
thirdparty/nep/nep.cpp
thirdparty/nep/nep.h
thirdparty/ptm/LICENSE
thirdparty/ptm/README
thirdparty/ptm/compute_ptm_atom.cpp
thirdparty/ptm/ptm_alloy_types.cpp
thirdparty/ptm/ptm_alloy_types.h
thirdparty/ptm/ptm_alt_templates.h
thirdparty/ptm/ptm_canonical_coloured.cpp
thirdparty/ptm/ptm_canonical_coloured.h
thirdparty/ptm/ptm_constants.cpp
thirdparty/ptm/ptm_constants.h
thirdparty/ptm/ptm_convex_hull_incremental.cpp
thirdparty/ptm/ptm_convex_hull_incremental.h
thirdparty/ptm/ptm_deformation_gradient.cpp
thirdparty/ptm/ptm_deformation_gradient.h
thirdparty/ptm/ptm_functions.h
thirdparty/ptm/ptm_fundamental_mappings.h
thirdparty/ptm/ptm_graph_data.cpp
thirdparty/ptm/ptm_graph_data.h
thirdparty/ptm/ptm_graph_tools.cpp
thirdparty/ptm/ptm_graph_tools.h
thirdparty/ptm/ptm_index.cpp
thirdparty/ptm/ptm_initialize_data.cpp
thirdparty/ptm/ptm_initialize_data.h
thirdparty/ptm/ptm_neighbour_ordering.cpp
thirdparty/ptm/ptm_neighbour_ordering.h
thirdparty/ptm/ptm_normalize_vertices.cpp
thirdparty/ptm/ptm_normalize_vertices.h
thirdparty/ptm/ptm_polar.cpp
thirdparty/ptm/ptm_polar.h
thirdparty/ptm/ptm_quat.cpp
thirdparty/ptm/ptm_quat.h
thirdparty/ptm/ptm_structure_matcher.cpp
thirdparty/ptm/ptm_structure_matcher.h
thirdparty/ptm/ptm_voronoi_cell.cpp
thirdparty/ptm/ptm_voronoi_cell.h
thirdparty/ptm/ptm_voronoi_config.h
thirdparty/voro++/LICENSE
thirdparty/voro++/README
thirdparty/voro++/c_info.hh
thirdparty/voro++/cell_2d.cc
thirdparty/voro++/cell_2d.hh
thirdparty/voro++/cell_3d.cc
thirdparty/voro++/cell_3d.hh
thirdparty/voro++/cmd_line.cc
thirdparty/voro++/common.cc
thirdparty/voro++/common.hh
thirdparty/voro++/config.hh
thirdparty/voro++/container_2d.cc
thirdparty/voro++/container_2d.hh
thirdparty/voro++/container_3d.cc
thirdparty/voro++/container_3d.hh
thirdparty/voro++/container_tri.cc
thirdparty/voro++/container_tri.hh
thirdparty/voro++/iter_2d.cc
thirdparty/voro++/iter_2d.hh
thirdparty/voro++/iter_3d.cc
thirdparty/voro++/iter_3d.hh
thirdparty/voro++/particle_list.cc
thirdparty/voro++/particle_list.hh
thirdparty/voro++/particle_order.hh
thirdparty/voro++/rad_option.hh
thirdparty/voro++/unitcell.cc
thirdparty/voro++/unitcell.hh
thirdparty/voro++/v_base_2d.cc
thirdparty/voro++/v_base_2d.hh
thirdparty/voro++/v_base_3d.cc
thirdparty/voro++/v_base_3d.hh
thirdparty/voro++/v_base_wl_2d.cc
thirdparty/voro++/v_base_wl_3d.cc
thirdparty/voro++/v_compute_2d.cc
thirdparty/voro++/v_compute_2d.hh
thirdparty/voro++/v_compute_3d.cc
thirdparty/voro++/v_compute_3d.hh
thirdparty/voro++/voro++.cc
thirdparty/voro++/voro++.hh
thirdparty/voro++/wall.cc
thirdparty/voro++/wall.hh
thirdparty/voro++/wall_2d.cc
thirdparty/voro++/wall_2d.hh
thirdparty/voro++/wall_3d.cc
thirdparty/voro++/wall_3d.hh
thirdparty/voro++/worklist_2d.hh
thirdparty/voro++/worklist_3d.hh