Package csb :: Package bio :: Package io :: Module psipred :: Class PSIPredParser |
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# Class PSIPredParser

source code

    object --+
             |
            PSIPredParser

Simple PSI-PRED Secondary Structure Parser.

Instance Methods
SecondaryStructure |
parse(self, psipred_file) | source code
list of PSIPredResidueInfo |
parse_scores(self, scores_file) | source code
Inherited from `object`: `__delattr__`, `__format__`, `__getattribute__`, `__hash__`, `__init__`, `__new__`, `__reduce__`, `__reduce_ex__`, `__repr__`, `__setattr__`, `__sizeof__`, `__str__`, `__subclasshook__`

Properties
Inherited from `object`: `__class__`

Method Details

### parse(self, psipred_file) | source code
Parameters: `psipred_file` (str) - source PSI-PRED *.horiz file to parse Returns: SecondaryStructure

### parse_scores(self, scores_file) | source code
Parameters: `scores_file` (str) - source PSI-PRED *.ss2 file to parse Returns: list of PSIPredResidueInfo