Package csb :: Package bio :: Package io :: Module wwpdb :: Class RegularStructureParser |
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# Class RegularStructureParser

source code

                 object --+
                          |
    AbstractStructureParser --+
                              |
                             RegularStructureParser

Known Subclasses:
  - PDBHeaderParser

This is the de facto PDB parser, which is designed to read SEQRES and ATOM sections separately, and them map them. Intentionally fails to parse malformed PDB files, e.g. a PDB file without a HEADER section.

Nested Classes
Inherited from `AbstractStructureParser`: `__metaclass__`

Instance Methods
Inherited from `AbstractStructureParser`: `__del__`, `__init__`, `guess_chain_type`, `guess_sequence_type`, `models`, `parse`, `parse_biomolecule`, `parse_models`, `parse_residue`, `parse_residue_safe`, `parse_structure` Inherited from `object`: `__delattr__`, `__format__`, `__getattribute__`, `__hash__`, `__new__`, `__reduce__`, `__reduce_ex__`, `__repr__`, `__setattr__`, `__sizeof__`, `__str__`, `__subclasshook__`

Static Methods
Inherited from `AbstractStructureParser`: `create_parser`

Class Variables
| __abstractmethods__ = ``frozenset([``])``

Properties
Inherited from `AbstractStructureParser`: `filename`, `mapper` Inherited from `object`: `__class__`