Package csb :: Package bio :: Package fragments :: Class ClusterNode |
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# Class ClusterNode

source code

    object --+
             |
            ClusterNode

Cluster node.

Instance Methods
__init__(self, fragment, distance=`'``rmsd_to``'`, fixed=False) x.__init__(...) initializes x; see help(type(x)) for signature | source code
float |
distance(self, other) Returns: the distance between self and another node | source code
Inherited from `object`: `__delattr__`, `__format__`, `__getattribute__`, `__hash__`, `__new__`, `__reduce__`, `__reduce_ex__`, `__repr__`, `__setattr__`, `__sizeof__`, `__str__`, `__subclasshook__`

Static Methods
ClusterNode |
create(fragment, method=`'``rmsd_to``'`, extend=False) Create a new ClusterNode given a specified `Assignment`. | source code

Class Variables
| FIXED = `0.7`

Properties
Inherited from `object`: `__class__`

Method Details

### __init__(self, fragment, distance=`'``rmsd_to``'`, fixed=False) (Constructor) | source code
x.__init__(...) initializes x; see help(type(x)) for signature Parameters: `fragment` (Assignment) - fragment `distance` (str) - distance metric (a Metrics member, default is RMSD) `fixed` (bool) - mark this node as fixed (cannot be rejected) Overrides: object.__init__ (inherited documentation)

### create(fragment, method=`'``rmsd_to``'`, extend=False) Static Method | source code
Create a new ClusterNode given a specified `Assignment`. If this assignment is a high probability match, define it as a fixed fragment. Returns: ClusterNode

### distance(self, other) | source code
Parameters: `other` (ClusterNode) Returns: float the distance between self and another node