MANIFEST.in
README.md
setup.cfg
setup.py
versioneer.py
microhapulator/__init__.py
microhapulator/__main__.py
microhapulator/_version.py
microhapulator/contain.py
microhapulator/contrib.py
microhapulator/diff.py
microhapulator/dist.py
microhapulator/mix.py
microhapulator/panel.py
microhapulator/prob.py
microhapulator/profile.py
microhapulator/seq.py
microhapulator/sim.py
microhapulator/type.py
microhapulator/unite.py
microhapulator.egg-info/PKG-INFO
microhapulator.egg-info/SOURCES.txt
microhapulator.egg-info/dependency_links.txt
microhapulator.egg-info/entry_points.txt
microhapulator.egg-info/requires.txt
microhapulator.egg-info/top_level.txt
microhapulator.egg-info/zip-safe
microhapulator/cli/__init__.py
microhapulator/cli/contain.py
microhapulator/cli/contrib.py
microhapulator/cli/diff.py
microhapulator/cli/dist.py
microhapulator/cli/mix.py
microhapulator/cli/prob.py
microhapulator/cli/seq.py
microhapulator/cli/sim.py
microhapulator/cli/type.py
microhapulator/cli/unite.py
microhapulator/data/.gitignore
microhapulator/data/panel-alpha-legacy.fasta
microhapulator/data/panel-alpha-legacy.txt
microhapulator/data/panel-beta-legacy.fasta
microhapulator/data/panel-beta-legacy.txt
microhapulator/data/profile-schema.json
microhapulator/data/usa-demographics.tsv
microhapulator/tests/__init__.py
microhapulator/tests/test_cli.py
microhapulator/tests/test_contain.py
microhapulator/tests/test_contrib.py
microhapulator/tests/test_diff.py
microhapulator/tests/test_dist.py
microhapulator/tests/test_mix.py
microhapulator/tests/test_prob.py
microhapulator/tests/test_profile.py
microhapulator/tests/test_seq.py
microhapulator/tests/test_sim.py
microhapulator/tests/test_type.py
microhapulator/tests/test_unite.py
microhapulator/tests/data/beta.fastq
microhapulator/tests/data/bitusa-profile.json
microhapulator/tests/data/bogus-refr.fa
microhapulator/tests/data/bogus-refr.fa.fai
microhapulator/tests/data/default-panel.fasta.gz
microhapulator/tests/data/diff-comp-1-2.txt
microhapulator/tests/data/diff-comp-1-3.txt
microhapulator/tests/data/diff-comp-1.json
microhapulator/tests/data/diff-comp-2.json
microhapulator/tests/data/diff-comp-3.json
microhapulator/tests/data/dyncut-panel.fasta.gz
microhapulator/tests/data/dyncut-test-reads.bam
microhapulator/tests/data/dyncut-test-reads.bam.bai
microhapulator/tests/data/euramer-inf-gt.json
microhapulator/tests/data/euramer-sim-gt.json
microhapulator/tests/data/four-brits-sim.json
microhapulator/tests/data/green-dad-1-gt.json
microhapulator/tests/data/green-dad-2-gt.json
microhapulator/tests/data/green-dad-3-gt.json
microhapulator/tests/data/green-kid-1-gt.json
microhapulator/tests/data/green-kid-2-gt.json
microhapulator/tests/data/green-kid-3-gt.json
microhapulator/tests/data/green-mom-1-gt.json
microhapulator/tests/data/green-mom-2-gt.json
microhapulator/tests/data/green-mom-3-gt.json
microhapulator/tests/data/green-sim-gt-1.json.gz
microhapulator/tests/data/green-sim-gt-2.json.gz
microhapulator/tests/data/green-sim-gt-3.json.gz
microhapulator/tests/data/green-sim-gt-combined.json.gz
microhapulator/tests/data/gttest-altered.json
microhapulator/tests/data/gttest-mismatch1.bed.gz
microhapulator/tests/data/gttest-mismatch2.bed.gz
microhapulator/tests/data/gttest.bed.gz
microhapulator/tests/data/gttest.json
microhapulator/tests/data/gujarati-ind1-gt.json
microhapulator/tests/data/gujarati-ind2-gt.json
microhapulator/tests/data/gujarati-ind3-gt.json
microhapulator/tests/data/gujarati-ind4-gt.json
microhapulator/tests/data/korea-5loc-1diff.json
microhapulator/tests/data/korea-5loc-2diff-a.json
microhapulator/tests/data/korea-5loc-2diff-b.json
microhapulator/tests/data/korea-5loc-2diff-c.json
microhapulator/tests/data/korea-5loc-missfreq.json
microhapulator/tests/data/korea-5loc-zerofreq.json
microhapulator/tests/data/korea-5loc.json
microhapulator/tests/data/meaning-of-life.json.gz
microhapulator/tests/data/minipanel.txt
microhapulator/tests/data/mixture-genotype.bed
microhapulator/tests/data/mixture-genotype.json
microhapulator/tests/data/one-american-sim.json
microhapulator/tests/data/one-brit-sim.json
microhapulator/tests/data/one-italian-sim.json
microhapulator/tests/data/orange-haplo.fasta
microhapulator/tests/data/orange-reads.fastq
microhapulator/tests/data/orange-sim-profile.json
microhapulator/tests/data/red-reads-relaxed.fastq
microhapulator/tests/data/red-reads-strict.fastq
microhapulator/tests/data/red-relaxed-profile.json
microhapulator/tests/data/red-strict-profile.json
microhapulator/tests/data/sandawe-dad.bam
microhapulator/tests/data/sandawe-dad.json
microhapulator/tests/data/sandawe-mom.json
microhapulator/tests/data/sandawe-panel.fasta.gz
microhapulator/tests/data/single-contrib-1.json
microhapulator/tests/data/single-contrib-2.json
microhapulator/tests/data/single-contrib-3.json
microhapulator/tests/data/swedish-dad.json
microhapulator/tests/data/swedish-mom.json
microhapulator/tests/data/three-contrib-even.json
microhapulator/tests/data/three-contrib-log-link.bam
microhapulator/tests/data/three-contrib-log.bam
microhapulator/tests/data/three-contrib-log.bam.bai
microhapulator/tests/data/three-contrib-log.json
microhapulator/tests/data/three-loci-refr.fasta
microhapulator/tests/data/two-contrib-even.json
microhapulator/tests/data/yellow-mix-gt.json
microhapulator/tests/data/murica/x-obs-genotype.json
microhapulator/tests/data/murica/x-sim-genotype.bed
microhapulator/tests/data/murica/y-obs-genotype.json
microhapulator/tests/data/murica/y-sim-genotype.bed
microhapulator/tests/data/murica/z-obs-genotype-dist0.json
microhapulator/tests/data/murica/z-obs-genotype-dist1.json
microhapulator/tests/data/murica/z-obs-genotype-dist2.json
microhapulator/tests/data/murica/z-sim-genotype.bed
microhapulator/tests/data/murica/z-sim-genotype.json
microhapulator/tests/data/pashtun-sim/aligned-reads.bam
microhapulator/tests/data/pashtun-sim/aligned-reads.bam.bai
microhapulator/tests/data/pashtun-sim/simulated-genotype.bed
microhapulator/tests/data/pashtun-sim/simulated-reads.fastq.gz
microhapulator/tests/data/pashtun-sim/test-output.json
microhapulator/tests/data/pashtun-sim/tiny-panel.fasta.gz