LICENSE
README.md
setup.py
make_prg/__init__.py
make_prg/__main__.py
make_prg/io_utils.py
make_prg/prg_encoder.py
make_prg/seq_utils.py
make_prg.egg-info/PKG-INFO
make_prg.egg-info/SOURCES.txt
make_prg.egg-info/dependency_links.txt
make_prg.egg-info/entry_points.txt
make_prg.egg-info/requires.txt
make_prg.egg-info/top_level.txt
make_prg/from_msa/__init__.py
make_prg/from_msa/cluster_sequences.py
make_prg/from_msa/interval_partition.py
make_prg/from_msa/prg_builder.py
make_prg/subcommands/__init__.py
make_prg/subcommands/from_msa.py
make_prg/subcommands/output_type.py
tests/__init__.py
tests/test_output_type.py
tests/test_prg_encoder.py
tests/test_seq_utils.py
tests/from_msa/__init__.py
tests/from_msa/test_cluster_sequences.py
tests/from_msa/test_interval_partition.py
tests/from_msa/test_prg_builder.py