Metadata-Version: 2.1
Name: pypesto
Version: 0.0.4
Summary: python Parameter EStimation TOolbox
Home-page: https://github.com/icb-dcm/pypesto
Author: The pyPESTO developers
Author-email: yannik.schaelte@gmail.com
License: UNKNOWN
Description: # pyPESTO - Parameter EStimation TOolbox for python
        
        **pyPESTO** is a widely applicable and highly customizable toolbox for
        parameter estimation.
        
        [![PyPI version](https://badge.fury.io/py/pypesto.svg)](https://badge.fury.io/py/pypesto)
        [![Build Status](https://travis-ci.com/ICB-DCM/pyPESTO.svg?branch=master)](https://travis-ci.com/ICB-DCM/pyPESTO)
        [![Code coverage](https://codecov.io/gh/ICB-DCM/pyPESTO/branch/master/graph/badge.svg)](https://codecov.io/gh/ICB-DCM/pyPESTO) [![Code quality](https://api.codacy.com/project/badge/Grade/134432ddad0e464b8494587ff370f661)](https://www.codacy.com/app/dweindl/pyPESTO?utm_source=github.com&amp;utm_medium=referral&amp;utm_content=ICB-DCM/pyPESTO&amp;utm_campaign=Badge_Grade)
        [![Documentation Status](https://readthedocs.org/projects/pypesto/badge/?version=latest)](https://pypesto.readthedocs.io)
        
        ## Feature overview
        
        pyPESTO features include:
        
        * Multi-start local optimization
        * Profile computation
        * Result visualization
        * Interface to [AMICI](https://github.com/ICB-DCM/AMICI/) for efficient simulation and sensitivity analysis of ordinary differential equation (ODE) models
        * Parameter estimation pipeline for systems biology problems specified in [SBML](http://sbml.org/) and [PEtab](https://github.com/ICB-DCM/PEtab)
        
        ## Quick install
        
        The simplest way to install **pyPESTO** is via pip:
        
        ```shell
        pip3 install pypesto
        ```
        
        More information is available here:
        https://pypesto.readthedocs.io/en/latest/install.html
        
        ## Documentation
        
        The documentation is hosted on readthedocs.io:
        <https://pypesto.readthedocs.io>
        
        ## Examples
        
        Multiple use cases are discussed in the documentation. In particular, there are
        jupyter notebooks in the [doc/example](doc/example) directory.
        
        ## Contributing
        
        We are happy about any contributions. For more information on how to contribute
        to pyPESTO check out
        <https://pypesto.readthedocs.io/en/latest/contribute.html>
        
        ## References
        
        [**PESTO**](https://github.com/ICB-DCM/PESTO/):
        Parameter estimation toolbox for MATLAB. Development is discontinued, but PESTO
        comes with additional features waiting to be ported to pyPESTO.
        
Platform: UNKNOWN
Requires-Python: >=3.6
Description-Content-Type: text/markdown
Provides-Extra: amici
