.. _ref_api:

=============
Documentation
=============

PyEMMA is a Python library and can be used through python or ipython.
See Tutorials for examples and getting started.
The API (Application Programming Interface) is currently divided into two main packages:

.. toctree::
   :maxdepth: 2

   index_coor
   index_msm
   index_thermo

Plotting functions for aiding in the scientific analysis are found here:

.. toctree::
   :maxdepth: 2

   index_plots
