Metadata-Version: 1.1
Name: ushuffle
Version: 1.0.2
Summary: A Cython wrapper over uShuffle - a useful tool for shuffling biological sequences while preserving the k-let counts.
Home-page: https://github.com/guma44/ushuffle
Author: Rafal Gumienny
Author-email: guma44@gmail.com
License: BSD license
Description-Content-Type: UNKNOWN
Description: uShuffle
        ========
        
        .. image:: https://img.shields.io/pypi/v/ushuffle.svg
                :target: https://pypi.python.org/pypi/ushuffle
        
        A Cython wrapper around uShuffle - a useful tool for shuffling biological sequences while preserving the k-let counts
        
        This is just a bundle of files downloaded from [ushuffle](http://digital.cs.usu.edu/~mjiang/ushuffle/)
        and wrapped in Cython for easy installation and use.
        
        Installation
        ------------
        
        ```
        git clone https://github.com/guma44/ushuffle.git
        cd ushuffle
        python setup.py install [ --user ]
        ```
        
        or
        
        ```
        pip install [--user] ushuffle
        ```
        
        Usage
        -----
        
        The library exposes a shuffling function shuffle and a Shuffler object used to
        make shuffling many times eg.:
        
        ```
        from ushuffle import shuffle, Shuffler
        seq = "ababcdcdabdcabvababab"
        shuffler = Shuffler(self.seq, len(self.seq), 2)
        for i in range(10):
            seqres = shuffler.shuffle()
            print("results:", seqres)
        print shuffle(a, 2)
        ```
        
        
        References
        ----------
        
        If you use this tool please refer to the original paper and authors:
        Minghui Jiang, James Anderson, Joel Gillespie, and Martin Mayne. [uShuffle: a useful tool for shuffling biological sequences while preserving the k-let counts.](http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-9-192) BMC Bioinformatics, 9:#192, 2008.
        
        
Keywords: ushuffle
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.6
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
