.bumpversion.cfg
.coveragerc
.flake8
.gitignore
.pylintrc
AUTHORS.rst
CHANGELOG.rst
CODE_OF_CONDUCT.rst
CONTRIBUTING.rst
Dockerfile
LICENSE
README.md
SECURITY.md
appveyor.yml
codecov.yml
pyproject.toml
requirements.txt
setup.cfg
setup.py
tox.ini
.github/workflows/macos_python.yml
.github/workflows/python-package.yml
.github/workflows/release_package.yml
.github/workflows/ubuntu20_python.yml
capture/.gitignore
data/csv/sample_2D_linW.csv
data/csv/sample_2D_logW.csv
data/csv/sample_3D_linW.csv
data/fits/.gitignore
data/map/US_population.png
data/map/US_population_cutoff.png
data/npy/mask.npy
docs/Makefile
docs/authors.rst
docs/changelog.rst
docs/code_of_conduct.rst
docs/conf.py
docs/contributing.rst
docs/developer.rst
docs/index.rst
docs/license.rst
docs/readme.rst
docs/requirements.txt
docs/_static/.gitignore
docs/_static/polyphy-custom.css
experiments/jupyter/production/PolyPhy_2D_continuous_data.ipynb
experiments/jupyter/production/PolyPhy_2D_discrete_data.ipynb
experiments/jupyter/production/PolyPhy_3D_discrete_data.ipynb
experiments/jupyter/testing/PolyPhy_3D_discrete_data_pathtraced.ipynb
experiments/jupyter/testing/PolyPhy_3D_discrete_data_pathtraced_modified.ipynb
experiments/jupyter/testing/PolyPhy_3D_discrete_mask.ipynb
experiments/jupyter/testing/PolyPhy_3D_discrete_mask_TAICHI1.6.ipynb
experiments/jupyter/testing/colormap.png
src/polyphy/polyphy.py
src/polyphy/core/common.py
src/polyphy/core/discrete2D.py
src/polyphy/core/discrete3D.py
src/polyphy/kernel/common.py
src/polyphy/kernel/discrete2D.py
src/polyphy/kernel/discrete3D.py
src/polyphy/pipelines/common.py
src/polyphy/pipelines/discrete2D.py
src/polyphy/pipelines/discrete3D.py
src/polyphy/utils/cli_helper.py
src/polyphy/utils/gui_helper.py
src/polyphy/utils/logger.py
src/polyphy_rule.egg-info/PKG-INFO
src/polyphy_rule.egg-info/SOURCES.txt
src/polyphy_rule.egg-info/dependency_links.txt
src/polyphy_rule.egg-info/entry_points.txt
src/polyphy_rule.egg-info/not-zip-safe
src/polyphy_rule.egg-info/requires.txt
src/polyphy_rule.egg-info/top_level.txt
tests/test_units.py
third_party/README.md