README.md
setup.py
spacegraphcats/__init__.py
spacegraphcats/count-leaf-redundancy.py
spacegraphcats.egg-info/PKG-INFO
spacegraphcats.egg-info/SOURCES.txt
spacegraphcats.egg-info/dependency_links.txt
spacegraphcats.egg-info/top_level.txt
spacegraphcats/catlas/Eppstein.py
spacegraphcats/catlas/__init__.py
spacegraphcats/catlas/catlas.py
spacegraphcats/catlas/components.py
spacegraphcats/catlas/converter.py
spacegraphcats/catlas/graph.py
spacegraphcats/catlas/graph_io.py
spacegraphcats/catlas/graph_parser.py
spacegraphcats/catlas/gxt_to_gml.py
spacegraphcats/catlas/rdomset.py
spacegraphcats/catlas/test_components.py
spacegraphcats/catlas/test_graph.py
spacegraphcats/catlas/test_graph_io.py
spacegraphcats/catlas/test_parser.py
spacegraphcats/catlas/test_rdomset.py
spacegraphcats/cdbg/__init__.py
spacegraphcats/cdbg/bcalm_to_gxt.py
spacegraphcats/cdbg/estimate_query_abundance.py
spacegraphcats/cdbg/label_cdbg.py
spacegraphcats/index/__init__.py
spacegraphcats/index/index_contigs_by_kmer.py
spacegraphcats/search/__init__.py
spacegraphcats/search/analyze_profile.py
spacegraphcats/search/catlas.py
spacegraphcats/search/catlas_info.py
spacegraphcats/search/characterize_catlas_regions.py
spacegraphcats/search/estimate_query_abundance.py
spacegraphcats/search/evaluate_overhead.py
spacegraphcats/search/extract_contigs.py
spacegraphcats/search/extract_contigs_cdbg.py
spacegraphcats/search/extract_nodes_by_query.py
spacegraphcats/search/extract_nodes_by_shadow_ratio.py
spacegraphcats/search/extract_reads.py
spacegraphcats/search/extract_unassembled_nodes.py
spacegraphcats/search/frontier_search.py
spacegraphcats/search/index.py
spacegraphcats/search/make_donut.py
spacegraphcats/search/nodeinfo_by_query.py
spacegraphcats/search/search_utils.py
spacegraphcats/search/test_search.py
spacegraphcats/search/test_workflow.py
spacegraphcats/utils/__init__.py
spacegraphcats/utils/logging.py
spacegraphcats/utils/make_bgzf.py
spacegraphcats/utils/bgzf/__init__.py
spacegraphcats/utils/bgzf/_py3k.py
spacegraphcats/utils/bgzf/bgzf.py