CHANGELOG.md
CONTRIBUTING.md
DISCLAIMER.md
LICENSE
MANIFEST.in
README.md
VERSION
requirements.txt
setup.cfg
setup.py
docker/Dockerfile
docker/Dockerfile.workflow
docker/README.md
docker/build.sh
docs/Makefile
docs/conf.py
docs/index.rst
src/geneflow/__init__.py
src/geneflow/__main__.py
src/geneflow/app_installer.py
src/geneflow/config.py
src/geneflow/data.py
src/geneflow/data_manager.py
src/geneflow/definition.py
src/geneflow/environment.py
src/geneflow/log.py
src/geneflow/shell_wrapper.py
src/geneflow/stageable_data.py
src/geneflow/template_compiler.py
src/geneflow/uri_parser.py
src/geneflow/workflow.py
src/geneflow/workflow_dag.py
src/geneflow/workflow_input.py
src/geneflow/workflow_installer.py
src/geneflow/workflow_step.py
src/geneflow.egg-info/PKG-INFO
src/geneflow.egg-info/SOURCES.txt
src/geneflow.egg-info/dependency_links.txt
src/geneflow.egg-info/entry_points.txt
src/geneflow.egg-info/not-zip-safe
src/geneflow.egg-info/requires.txt
src/geneflow.egg-info/top_level.txt
src/geneflow/cli/__init__.py
src/geneflow/cli/add_apps.py
src/geneflow/cli/add_workflows.py
src/geneflow/cli/common.py
src/geneflow/cli/help.py
src/geneflow/cli/init_db.py
src/geneflow/cli/install_workflow.py
src/geneflow/cli/make_app.py
src/geneflow/cli/migrate_db.py
src/geneflow/cli/run.py
src/geneflow/cli/run_pending.py
src/geneflow/extend/__init__.py
src/geneflow/extend/agave_step.py
src/geneflow/extend/agave_workflow.py
src/geneflow/extend/agave_wrapper.py
src/geneflow/extend/data_manager_contexts.py
src/geneflow/extend/local_step.py
src/geneflow/extend/local_workflow.py
tests/README.md
tests/behave.ini
tests/test.conf
tests/features/environment.py
tests/features/shell-wrapper.feature
tests/features/uri-parser.feature
tests/features/workflows-agave.feature
tests/features/workflows-local.feature