Metadata-Version: 1.1
Name: neuro_pypes
Version: 1.0.1
Summary: Reusable and configurable neuroimaging pipelines with Nipype.
Home-page: UNKNOWN
Author: Alexandre Savio
Author-email: alexsavio@gmail.com
License: Apache License, Version 2.0
Description-Content-Type: UNKNOWN
Description: # neuro_pypes
        
        [![image](https://readthedocs.org/projects/neuro-pypes/badge/?version=latest)](http://neuro-pypes.readthedocs.io)
        [![DOI](https://zenodo.org/badge/46623736.svg)](https://zenodo.org/badge/latestdoi/46623736)
        
        Reusable neuroimaging pipelines using [nipype](http://nipype.readthedocs.io/) and state-of-the-art
        neuroimaging preprocessing software.
        
        The objectives of this projects are:
        
        - easy-to-use, complete, reusable, and configurable pre-processing pipelines, and
        - high-quality results with the minimum manual intervention in the images.
        
        
        ## Documentation
        
        Please have a look at the documentation [here](http://neuro-pypes.readthedocs.io).
        
        ## Citation
        
        If you use Pypes please cite it:
        
        ```
        Alexandre M. Savio, Michael Schutte, Manuel Graña and Igor Yakushev
        Pypes: Workflows for Processing Multimodal Neuroimaging Data
        Front. Neuroinform., April 2017, vol 11, 2017, pages 25
        issn: 1662-5196
        doi: 10.3389/finf.2017.00025
        ```
        [https://doi.org/10.3389/fninf.2017.00025](https://doi.org/10.3389/fninf.2017.00025)
        
        ...or the BibTeX:
        ```
        @ARTICLE{10.3389/fninf.2017.00025,
        AUTHOR={Savio, Alexandre M. and Schutte, Michael and Graña, Manuel and Yakushev, Igor},
        TITLE={Pypes: Workflows for Processing Multimodal Neuroimaging Data},
        JOURNAL={Frontiers in Neuroinformatics},
        VOLUME={11},
        PAGES={25},
        YEAR={2017},
        URL={http://journal.frontiersin.org/article/10.3389/fninf.2017.00025},
        DOI={10.3389/fninf.2017.00025},
        ISSN={1662-5196}
        }
        ```
        Also consider citing [Nipype](http://nipype.readthedocs.io) and all the other open source tools you use.
        
        ## License
        
        Licensed under the Apache License, Version 2.0.
        
        Changelog
        =========
        
        Version 1.0.1
        -------------
        
        - Bug fix: some wrong import names with the module name change.
        - Bug fix: added missing requirements.
        
        
        Version 1.0.0
        -------------
        
        - API break: Change module name from `pypes` to `neuro_pypes`.
        - Documentation update.
        
        
        Version 0.3.5
        -------------
        
        - Fix connection naming in the fMRI pipeline atlas output.
        
        
        Version 0.3.4
        -------------
        
        - Fix connection naming in the fMRI pipeline atlas output.
        
        
        Version 0.3.3
        -------------
        
        - Fix output renaming in SPM+DiReCT pipeline.
        
        - Add `black_bg` parameter to multi slices plotting functions.
        
        - Add motion_stats_sheet to fmri utils.
        
        - General fix on import ordering which was raising errors from new Nipype.
        
        Version 0.3.2
        -------------
        
        - Add atlas warping to fMRI pipeline.
        
        - Fixes in fMRI pipeline.
        
        Version 0.3 - 0.3.1
        -------------------
        - Add motion statistics measures in DTI pipeline.
        
        - Improve documentation.
        
        - Add SPM+DiReCT option to anatomical preprocessing.
        
        - Add `invoke` examples in tasks.py.
        
        - Style and bug fixes.
        
        - Fix imports for latest `nipype` version.
        
        - Add `plot_ortho_slices` function to `nilearn` interface.
        
        
        Version 0.2.0 - 0.2.1
        ---------------------
        - Add mkdocs documentation and readthedocs setup.
        
        - Add registration options for PET and fMRI. Add options for this in config.
        
        - Add group template for fMRI and PET pipelines.
        
        - Add brain_mask output to anatomical MR pipeline.
        
        - Rename/re-structure fMRI pipeline and files.
        
        - Improve PET output file namings.
        
        - Add settings for Camino in config.
        
        - Fix bug in _get_n_slices in slicetime_params.
        
        - Bug fixes.
        
Platform: Linux/MacOSX
Classifier: Programming Language :: Python
Classifier: Development Status :: 4 - Beta
Classifier: Natural Language :: English
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Operating System :: OS Independent
Classifier: Topic :: Scientific/Engineering :: Information Analysis
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
Classifier: Operating System :: POSIX
Classifier: Operating System :: Unix
Classifier: Operating System :: MacOS
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
