# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# PyInstaller
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*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Package setup
*.egg-info
/build
/dist

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docs/build/*

# PyBuilder
target/

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# Environments
.env
.venv
env/
venv/
ENV/

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/

# Ignore TODO list
TODO.md
CHANGELOG.md
/.trash

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.coverage
docs/coverage_report/*

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!/**/.gitignore
requirements.dev.txt
manuscript.pdf
/data/rpgn_example/
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docs/source/.pybiomart.sqlite
test/data/fabry_disease/counts_pytximport_lengthScaledTPM.csv
test/data/fabry_disease/counts_pytximport_no.csv
test/data/fabry_disease/counts_pytximport_scaledTPM.csv
test/data/fabry_disease/counts_pytximport.csv
test/data/salmon/quant.h5ad
.pybiomart.sqlite
test/data/salmon/counts_pytximport_dtuScaledTPM.csv
