Metadata-Version: 2.1
Name: napari-imc
Version: 0.3.2
Summary: Imaging Mass Cytometry (IMC) file type support for napari
Home-page: https://github.com/BodenmillerGroup/napari-imc
Author: Jonas Windhager
Author-email: jonas.windhager@uzh.ch
License: MIT
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Framework :: napari
Classifier: Topic :: Software Development :: Testing
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Operating System :: OS Independent
Classifier: License :: OSI Approved :: MIT License
Requires-Python: >=3.6
Description-Content-Type: text/markdown
Requires-Dist: napari[all] (==0.4.3)
Requires-Dist: napari-plugin-engine (>=0.1.4)
Requires-Dist: imageio
Requires-Dist: imctools (>=2.1.1)
Requires-Dist: qtpy

# napari-imc

[![License](https://img.shields.io/pypi/l/napari-imc.svg?color=green)](https://github.com/BodenmillerGroup/napari-imc/raw/master/LICENSE)
[![PyPI](https://img.shields.io/pypi/v/napari-imc.svg?color=green)](https://pypi.org/project/napari-imc)
[![Python Version](https://img.shields.io/pypi/pyversions/napari-imc.svg?color=green)](https://python.org)
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Imaging Mass Cytometry (IMC) file type support for napari

----------------------------------

This [napari] plugin was generated with [Cookiecutter] using with [@napari]'s [cookiecutter-napari-plugin] template.

<!--
Don't miss the full getting started guide to set up your new package:
https://github.com/napari/cookiecutter-napari-plugin#getting-started

and review the napari docs for plugin developers:
https://napari.org/docs/plugins/index.html
-->

## Installation

You can install `napari-imc` via [pip]:
```shell
pip install napari-imc
```

As napari is in active development, the use of virtual environments is strongly recommended.

## Usage

To start `napari-imc` from command line:

```shell
napari-imc
```

For code usage from within Python:

```python
import napari

from napari_imc import IMCController

with napari.gui_qt():
    viewer = napari.Viewer(title='napari [IMC]')
    controller = IMCController(viewer)
    controller.initialize()
```

## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure
the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [MIT] license,
"napari-imc" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[@napari]: https://github.com/napari
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin
[file an issue]: https://github.com/BodenmillerGroup/napari-imc/issues
[napari]: https://github.com/napari/napari
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/

