Metadata-Version: 2.1
Name: vfdbQuery
Version: 0.0.1
Summary: Package for quickly querying an assembly against the VFDB
Home-page: https://github.com/bfssi-forest-dussault/vfdbQuery
Author: Forest Dussault
Author-email: forest.dussault@canada.ca
License: UNKNOWN
Platform: UNKNOWN
Requires-Python: ~=3.6
Description-Content-Type: text/markdown
Requires-Dist: click
Requires-Dist: pandas
Requires-Dist: matplotlib
Requires-Dist: numpy

# vfdbQuery

### Requirements
- Python 3.6
- [ncbi-blast+](https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastDocs&DOC_TYPE=Download) (makeblastdb and blastn must be in your $PATH)

### Installation
```
pip install vfdbQuery
```

### Usage
```bash
Usage: vfdbQuery [OPTIONS]

Options:
  -i, --infile PATH     FASTA file that you want to search against VDB
                        [required]
  -db, --database PATH  Path to Virulence Factor Database (VDB)  [required]
  --help                Show this message and exit.
```

