Metadata-Version: 2.1
Name: microbenthos
Version: 0.14
Summary: Modeling framework for microbenthic habitats useful for studies in biogeochemistry and marine microbial ecology.
Home-page: https://microbenthos.readthedocs.io
Author: Arjun Chennu
Author-email: arjun.chennu@gmail.com
License: MIT license
Description: 
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            :target: https://pypi.python.org/pypi/microbenthos
        
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            :target: https://microbenthos.readthedocs.io/en/latest/?badge=latest
            :alt: Documentation Status
        
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            :alt: Journal of Open Source Software
        
        .. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.3583388.svg
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           :alt: Zenodo software archive
        
        MicroBenthos is a modeling framework (in python) useful for studies of benthic
        microbial systems, such as microbial mats, marine sediments, etc. It enables in
        silico experiments in microbial ecophysiology and biogeochemistry through
        computational simulations of geochemical processes, microbial metabolism and
        mass transport physics.
        
        * Free software: MIT license
        * Documentation: https://microbenthos.readthedocs.io
        * Source code: https://github.com/achennu/microbenthos
        
        Simulation example
        -------------------
        
        From `youtube <https://www.youtube.com/watch?v=CnHjVJKXo0A>`_
        
        
        Features
        --------
        
        * Create microbenthic systems:
            Study dynamics of microbial and geochemical sedimentary processes by solving
            their partial differential equations. Easily include microbial populations,
            solar irradiance, anisotropic diffusion and more in your models.
        
        * Scientist-friendly:
            Define constitutive chemical and biological processes simply as mathematical
            formulae. Data is saved in open archival format.
        
        * Visualize on the go:
            Includes visualization of modelled parameters and results that can be viewed
            live, and exported to video. Progress information on simulation is also shown.
        
        * Stateful simulations:
            Simulations can be interrupted and then resumed, allowing for interactive
            inspection and time-saving.
        
        * No programming required:
            Systems and behavior can be defined through a structured text file.
        
        * Extensible:
            New modalities of microbial systems can be created with simple programming
            around a defined structure.
        
Keywords: microbenthos,biogeochemistry,marine biology,microbial ecology,simulation,modeling,microbial mats,sediments
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python 
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Provides-Extra: docs
Provides-Extra: test
