LICENSE
MANIFEST.in
README.md
pyproject.toml
crispector2/__init__.py
crispector2/cli.py
crispector2/crispector_main.py
crispector2.egg-info/PKG-INFO
crispector2.egg-info/SOURCES.txt
crispector2.egg-info/dependency_links.txt
crispector2.egg-info/entry_points.txt
crispector2.egg-info/requires.txt
crispector2.egg-info/top_level.txt
crispector2/algorithm/__init__.py
crispector2/algorithm/binomial_probability.py
crispector2/algorithm/core_algorithm.py
crispector2/algorithm/translocations.py
crispector2/algorithm/translocations_original.py
crispector2/allele/__init__.py
crispector2/allele/allele_mock.py
crispector2/allele/allele_reference_df.py
crispector2/allele/allele_tx.py
crispector2/allele/inconsistent_allele_freq.py
crispector2/allele/random_reads_handler.py
crispector2/config/__init__.py
crispector2/config/default_config.yml
crispector2/input_processing/__init__.py
crispector2/input_processing/alignment.py
crispector2/input_processing/input_processing.py
crispector2/input_processing/utils.py
crispector2/modifications/__init__.py
crispector2/modifications/modification_tables.py
crispector2/modifications/modification_types.py
crispector2/report/__init__.py
crispector2/report/html_report.py
crispector2/report/visualization_and_output.py
crispector2/report/html_templates/.DS_Store
crispector2/report/html_templates/crispector_logo.jpg
crispector2/report/html_templates/crispector_logo.png
crispector2/report/html_templates/file_to_render.html
crispector2/report/html_templates/file_to_render_old.html
crispector2/report/html_templates/final_layout.html
crispector2/report/html_templates/final_layout_old.html
crispector2/report/html_templates/site_file_to_render.html
crispector2/report/html_templates/site_layout.html
crispector2/utils/__init__.py
crispector2/utils/configurator.py
crispector2/utils/constants_and_types.py
crispector2/utils/constants_and_types_old.py
crispector2/utils/exceptions.py
crispector2/utils/logger.py