README.md
setup.py
janis_bioinformatics/__init__.py
janis_bioinformatics/__meta__.py
janis_bioinformatics/data_types/__init__.py
janis_bioinformatics/data_types/bai.py
janis_bioinformatics/data_types/bam.py
janis_bioinformatics/data_types/bed.py
janis_bioinformatics/data_types/fasta.py
janis_bioinformatics/data_types/fastq.py
janis_bioinformatics/data_types/paired_read.py
janis_bioinformatics/data_types/sam.py
janis_bioinformatics/data_types/vcf.py
janis_bioinformatics/tools/__init__.py
janis_bioinformatics/tools/bioinformaticstoolbase.py
janis_bioinformatics/tools/blast.py
janis_bioinformatics/tools/fq2fa.py
janis_bioinformatics/tools/gather.py
janis_bioinformatics/tools/idba.py
janis_bioinformatics/tools/babrahambioinformatics/__init__.py
janis_bioinformatics/tools/babrahambioinformatics/fastqc/__init__.py
janis_bioinformatics/tools/babrahambioinformatics/fastqc/base.py
janis_bioinformatics/tools/babrahambioinformatics/fastqc/fastqc_0_11_5.py
janis_bioinformatics/tools/babrahambioinformatics/fastqc/fastqc_0_11_8.py
janis_bioinformatics/tools/babrahambioinformatics/fastqc/latest.py
janis_bioinformatics/tools/bcftools/__init__.py
janis_bioinformatics/tools/bcftools/bcftools_1_5.py
janis_bioinformatics/tools/bcftools/bcftools_1_9.py
janis_bioinformatics/tools/bcftools/bcftoolstoolbase.py
janis_bioinformatics/tools/bcftools/annotate/__init__.py
janis_bioinformatics/tools/bcftools/annotate/annotate_1_5.py
janis_bioinformatics/tools/bcftools/annotate/annotate_1_9.py
janis_bioinformatics/tools/bcftools/annotate/base.py
janis_bioinformatics/tools/bcftools/annotate/latest.py
janis_bioinformatics/tools/bcftools/norm/__init__.py
janis_bioinformatics/tools/bcftools/norm/base.py
janis_bioinformatics/tools/bcftools/norm/latest.py
janis_bioinformatics/tools/bcftools/norm/norm_1_5.py
janis_bioinformatics/tools/bcftools/norm/norm_1_9.py
janis_bioinformatics/tools/bcftools/sort/__init__.py
janis_bioinformatics/tools/bcftools/sort/base.py
janis_bioinformatics/tools/bcftools/sort/latest.py
janis_bioinformatics/tools/bcftools/sort/sort_1_9.py
janis_bioinformatics/tools/bcftools/view/__init__.py
janis_bioinformatics/tools/bcftools/view/base.py
janis_bioinformatics/tools/bcftools/view/latest.py
janis_bioinformatics/tools/bcftools/view/view_1_5.py
janis_bioinformatics/tools/bcftools/view/view_1_9.py
janis_bioinformatics/tools/bwa/__init__.py
janis_bioinformatics/tools/bwa/bwa_0_7_15.py
janis_bioinformatics/tools/bwa/bwalatest.py
janis_bioinformatics/tools/bwa/mem/__init__.py
janis_bioinformatics/tools/bwa/mem/base.py
janis_bioinformatics/tools/bwa/mem/latest.py
janis_bioinformatics/tools/bwa/mem/mem_0_7_15.py
janis_bioinformatics/tools/common/__init__.py
janis_bioinformatics/tools/common/alignsortedbam.py
janis_bioinformatics/tools/common/bwamem_samtoolsview.py
janis_bioinformatics/tools/common/mergeandmark.py
janis_bioinformatics/tools/common/splitmultiallele.py
janis_bioinformatics/tools/cutadapt/__init__.py
janis_bioinformatics/tools/cutadapt/base_1.py
janis_bioinformatics/tools/cutadapt/base_2.py
janis_bioinformatics/tools/cutadapt/cutadapt_1_18.py
janis_bioinformatics/tools/cutadapt/cutadapt_2_4.py
janis_bioinformatics/tools/cutadapt/latest.py
janis_bioinformatics/tools/ensembl/__init__.py
janis_bioinformatics/tools/ensembl/vep/__init__.py
janis_bioinformatics/tools/ensembl/vep/base.py
janis_bioinformatics/tools/ensembl/vep/basecache.py
janis_bioinformatics/tools/ensembl/vep/basedatabase.py
janis_bioinformatics/tools/ensembl/vep/latest.py
janis_bioinformatics/tools/ensembl/vep/vep_96_3.py
janis_bioinformatics/tools/ensembl/vep/vep_97_0.py
janis_bioinformatics/tools/gatk3/__init__.py
janis_bioinformatics/tools/gatk3/gatk3_latest.py
janis_bioinformatics/tools/gatk3/gatk3toolbase.py
janis_bioinformatics/tools/gatk3/gatk_3_3_7.py
janis_bioinformatics/tools/gatk3/baserecalibrator/__init__.py
janis_bioinformatics/tools/gatk3/baserecalibrator/base.py
janis_bioinformatics/tools/gatk3/baserecalibrator/baserecalibrator_3_3_7.py
janis_bioinformatics/tools/gatk3/baserecalibrator/latest.py
janis_bioinformatics/tools/gatk3/haplotypecaller/__init__.py
janis_bioinformatics/tools/gatk3/haplotypecaller/base.py
janis_bioinformatics/tools/gatk3/haplotypecaller/haplotypecaller_3_3_7.py
janis_bioinformatics/tools/gatk3/haplotypecaller/latest.py
janis_bioinformatics/tools/gatk3/mutect2/__init__.py
janis_bioinformatics/tools/gatk3/mutect2/base.py
janis_bioinformatics/tools/gatk3/mutect2/latest.py
janis_bioinformatics/tools/gatk3/mutect2/mutect2_3_3_7.py
janis_bioinformatics/tools/gatk3/printreads/__init__.py
janis_bioinformatics/tools/gatk3/printreads/base.py
janis_bioinformatics/tools/gatk3/printreads/latest.py
janis_bioinformatics/tools/gatk3/printreads/printreads_3_3_7.py
janis_bioinformatics/tools/gatk4/__init__.py
janis_bioinformatics/tools/gatk4/gatk4toolbase.py
janis_bioinformatics/tools/gatk4/gatk_4_0_12.py
janis_bioinformatics/tools/gatk4/gatk_latest.py
janis_bioinformatics/tools/gatk4/applybqsr/__init__.py
janis_bioinformatics/tools/gatk4/applybqsr/applybqsr_4_0.py
janis_bioinformatics/tools/gatk4/applybqsr/base.py
janis_bioinformatics/tools/gatk4/applybqsr/latest.py
janis_bioinformatics/tools/gatk4/baserecalibrator/__init__.py
janis_bioinformatics/tools/gatk4/baserecalibrator/base.py
janis_bioinformatics/tools/gatk4/baserecalibrator/baserecalibrator_4_0.py
janis_bioinformatics/tools/gatk4/baserecalibrator/latest.py
janis_bioinformatics/tools/gatk4/gathervcfs/__init__.py
janis_bioinformatics/tools/gatk4/gathervcfs/base.py
janis_bioinformatics/tools/gatk4/gathervcfs/gathervcfs_4_0.py
janis_bioinformatics/tools/gatk4/genotypeconcordance/__init__.py
janis_bioinformatics/tools/gatk4/genotypeconcordance/base.py
janis_bioinformatics/tools/gatk4/genotypeconcordance/genotypeconcordance_4_0.py
janis_bioinformatics/tools/gatk4/genotypeconcordance/latest.py
janis_bioinformatics/tools/gatk4/haplotypecaller/__init__.py
janis_bioinformatics/tools/gatk4/haplotypecaller/base.py
janis_bioinformatics/tools/gatk4/haplotypecaller/haplotypecaller_4_0.py
janis_bioinformatics/tools/gatk4/haplotypecaller/latest.py
janis_bioinformatics/tools/gatk4/markduplicates/__init__.py
janis_bioinformatics/tools/gatk4/markduplicates/base.py
janis_bioinformatics/tools/gatk4/markduplicates/latest.py
janis_bioinformatics/tools/gatk4/markduplicates/markduplicates_4_0.py
janis_bioinformatics/tools/gatk4/mergesamfiles/__init__.py
janis_bioinformatics/tools/gatk4/mergesamfiles/base.py
janis_bioinformatics/tools/gatk4/mergesamfiles/latest.py
janis_bioinformatics/tools/gatk4/mergesamfiles/mergesamfiles_4_0.py
janis_bioinformatics/tools/gatk4/mutect2/__init__.py
janis_bioinformatics/tools/gatk4/mutect2/base.py
janis_bioinformatics/tools/gatk4/mutect2/latest.py
janis_bioinformatics/tools/gatk4/mutect2/mutect2_4_0.py
janis_bioinformatics/tools/gatk4/printreads/__init__.py
janis_bioinformatics/tools/gatk4/printreads/base.py
janis_bioinformatics/tools/gatk4/printreads/latest.py
janis_bioinformatics/tools/gatk4/printreads/printreads_4_0.py
janis_bioinformatics/tools/gatk4/sortsam/__init__.py
janis_bioinformatics/tools/gatk4/sortsam/base.py
janis_bioinformatics/tools/gatk4/sortsam/latest.py
janis_bioinformatics/tools/gatk4/sortsam/sortsam_4_0.py
janis_bioinformatics/tools/htslib/__init__.py
janis_bioinformatics/tools/htslib/htslib_1_2_1.py
janis_bioinformatics/tools/htslib/htslib_1_9.py
janis_bioinformatics/tools/htslib/htslibbase.py
janis_bioinformatics/tools/htslib/latest.py
janis_bioinformatics/tools/htslib/bgzip/__init__.py
janis_bioinformatics/tools/htslib/bgzip/base.py
janis_bioinformatics/tools/htslib/bgzip/bgzip_1_2_1.py
janis_bioinformatics/tools/htslib/bgzip/bgzip_1_9.py
janis_bioinformatics/tools/htslib/bgzip/latest.py
janis_bioinformatics/tools/htslib/tabix/__init__.py
janis_bioinformatics/tools/htslib/tabix/base.py
janis_bioinformatics/tools/htslib/tabix/latest.py
janis_bioinformatics/tools/htslib/tabix/tabix_1_2_1.py
janis_bioinformatics/tools/htslib/tabix/tabix_1_9.py
janis_bioinformatics/tools/illumina/__init__.py
janis_bioinformatics/tools/illumina/illuminabase.py
janis_bioinformatics/tools/illumina/strelka_2_9_10.py
janis_bioinformatics/tools/illumina/strelka_2_9_9.py
janis_bioinformatics/tools/illumina/happy/__init__.py
janis_bioinformatics/tools/illumina/happy/happybase.py
janis_bioinformatics/tools/illumina/happy/versions.py
janis_bioinformatics/tools/illumina/manta/__init__.py
janis_bioinformatics/tools/illumina/manta/base.py
janis_bioinformatics/tools/illumina/manta/manta.py
janis_bioinformatics/tools/illumina/strelkagermline/__init__.py
janis_bioinformatics/tools/illumina/strelkagermline/base.py
janis_bioinformatics/tools/illumina/strelkagermline/strelkagermline.py
janis_bioinformatics/tools/illumina/strelkasomatic/__init__.py
janis_bioinformatics/tools/illumina/strelkasomatic/base.py
janis_bioinformatics/tools/illumina/strelkasomatic/strelkasomatic.py
janis_bioinformatics/tools/pappenfuss/__init__.py
janis_bioinformatics/tools/pappenfuss/gridss/__init__.py
janis_bioinformatics/tools/pappenfuss/gridss/base_2_2.py
janis_bioinformatics/tools/pappenfuss/gridss/base_2_4.py
janis_bioinformatics/tools/pappenfuss/gridss/gridss.py
janis_bioinformatics/tools/pmac/__init__.py
janis_bioinformatics/tools/pmac/utils_0_0_4.py
janis_bioinformatics/tools/pmac/combinevariants/__init__.py
janis_bioinformatics/tools/pmac/combinevariants/base.py
janis_bioinformatics/tools/pmac/combinevariants/combinevariants_0_0_4.py
janis_bioinformatics/tools/pmac/trimiupac/__init__.py
janis_bioinformatics/tools/pmac/trimiupac/base.py
janis_bioinformatics/tools/pmac/trimiupac/trimiupac_0_0_4.py
janis_bioinformatics/tools/samtools/__init__.py
janis_bioinformatics/tools/samtools/samtools_1_7.py
janis_bioinformatics/tools/samtools/samtools_1_9.py
janis_bioinformatics/tools/samtools/samtoolstoolbase.py
janis_bioinformatics/tools/samtools/sort/__init__.py
janis_bioinformatics/tools/samtools/sort/base.py
janis_bioinformatics/tools/samtools/sort/sort.py
janis_bioinformatics/tools/samtools/view/__init__.py
janis_bioinformatics/tools/samtools/view/base.py
janis_bioinformatics/tools/samtools/view/view.py
janis_bioinformatics/tools/ucsf/__init__.py
janis_bioinformatics/tools/ucsf/cnvkit/__init__.py
janis_bioinformatics/tools/ucsf/cnvkit/base.py
janis_bioinformatics/tools/ucsf/cnvkit/cnvkit_0_9_6.py
janis_bioinformatics/tools/validation/__init__.py
janis_bioinformatics/tools/validation/performancevalidator.py
janis_bioinformatics/tools/vardict/__init__.py
janis_bioinformatics/tools/vardict/vardict.py
janis_bioinformatics/tools/vardict/vardictgermline.py
janis_bioinformatics/tools/vardict/vardictsomatic.py
janis_bioinformatics/tools/variantcallers/__init__.py
janis_bioinformatics/tools/variantcallers/gatkgermline_variants.py
janis_bioinformatics/tools/variantcallers/gatksomatic_variants.py
janis_bioinformatics/tools/variantcallers/gridssgermline.py
janis_bioinformatics/tools/variantcallers/illuminagermline_strelka.py
janis_bioinformatics/tools/variantcallers/illuminasomatic_strelka.py
janis_bioinformatics/tools/variantcallers/vardictgermline_variants.py
janis_bioinformatics/tools/variantcallers/vardictsomatic_variants.py
janis_pipelines.bioinformatics.egg-info/PKG-INFO
janis_pipelines.bioinformatics.egg-info/SOURCES.txt
janis_pipelines.bioinformatics.egg-info/dependency_links.txt
janis_pipelines.bioinformatics.egg-info/entry_points.txt
janis_pipelines.bioinformatics.egg-info/not-zip-safe
janis_pipelines.bioinformatics.egg-info/requires.txt
janis_pipelines.bioinformatics.egg-info/top_level.txt