$ rnftools sam2es -h

usage: rnftools sam2es [-h] -i file -o file [-d int]

todo

optional arguments:
  -h, --help            show this help message and exit
  -i file, --sam file   SAM/BAM with aligned RNF reads(- for standard input).
  -o file, --es file    Output ES file (evaluated segments, - for standard
                        output).
  -d int, --allowed-delta int
                        Tolerance of difference of coordinates between true
                        (i.e., expected) alignment and real alignment (very
                        important parameter!) (default: 5).
