$ rnftools  -h

usage: rnftools [-h]
                {,check,publication,sam2rnf,art2rnf,curesim2rnf,dwgsim2rnf,mason2rnf,wgsim2rnf,merge,sam2es,es2et,et2roc,sam2roc}
                ...

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RNFtools -  http://rnftools.rtfd.org
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version: 0.1.1.dev105
contact: Karel Brinda (karel.brinda@univ-mlv.fr)
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positional arguments:
  {,check,publication,sam2rnf,art2rnf,curesim2rnf,dwgsim2rnf,mason2rnf,wgsim2rnf,merge,sam2es,es2et,et2roc,sam2roc}
    
    check               Check for the latest version.
    publication         Print information about the associated publication.
    
                        ---------------------[MIShmash]---------------------
    sam2rnf             Convert a SAM/BAM file to RNF-FASTQ.
    art2rnf             Convert output of Art to RNF-FASTQ.
    curesim2rnf         Convert output of CuReSim to RNF-FASTQ.
    dwgsim2rnf          Convert output of DwgSim to RNF-FASTQ.
    mason2rnf           Convert output of Mason to RNF-FASTQ.
    wgsim2rnf           Convert output of WgSim to RNF-FASTQ.
    merge               Merge RNF-FASTQ files and convert the output to
                        'traditional' FASTQ.
    
                        ---------------------[LAVEnder]---------------------
    sam2es              Convert SAM/BAM with reads in RNF to ES (evaluation of
                        segments).
    es2et               Convert ES to ET (evaluation of read tuples).
    et2roc              Convert ET to ROC (final statistics).
    sam2roc             Previous three steps in a single command.

optional arguments:
  -h, --help            show this help message and exit
