README.md
pyproject.toml
setup.py
spatialagent/__init__.py
spatialagent/config.py
spatialagent/logger.py
spatialagent.egg-info/PKG-INFO
spatialagent.egg-info/SOURCES.txt
spatialagent.egg-info/dependency_links.txt
spatialagent.egg-info/requires.txt
spatialagent.egg-info/top_level.txt
spatialagent/agents/__init__.py
spatialagent/agents/spatialx.py
spatialagent/agents/tools.py
spatialagent/agents/utils.py
spatialagent/tools/__init__.py
spatialagent/tools/cci.py
spatialagent/tools/cellmarker2.py
spatialagent/tools/combo_gptcelltype.py
spatialagent/tools/combo_gptcelltype_sub.py
spatialagent/tools/combo_gpttissueniche.py
spatialagent/tools/combo_gpttissueniche_sub.py
spatialagent/tools/czi.py
spatialagent/tools/genefinalize.py
spatialagent/tools/get_czi_info.py
spatialagent/tools/harmony.py
spatialagent/tools/infer_lr_confidence.py
spatialagent/tools/pangdb.py
spatialagent/tools/save_annotation.py
spatialagent/tools/scanpy_preprocess.py
spatialagent/tools/summarize_batch_annotation.py
spatialagent/tools/summarize_celltype_annotation.py
spatialagent/tools/summarize_tissueregion_annotation.py
spatialagent/tools/utag.py