Metadata-Version: 1.1
Name: zkdatabuilder
Version: 0.0.1
Summary: Builds E.coli model with DNA, free and bound transcription factors data file for lammps mimicing real bp density of E.coli
Home-page: UNKNOWN
Author: Zafer Kosar
Author-email: zafer.kosar.physics@gmail.com
License: MIT
Description: Builds E.coli model with DNA, free and bound transcription factors data file for lammps mimicing real bp density of E.coli
        
        atom type = angle
        
        6 types of atoms represents
            1 = DNA monomer
            2 = DNA monomer specific sites
            3 = free transcription factors binding sites
            4 = bound transcription factor binding sites
            5 = stem point for transcription factors no affinity to "2"
            6 = cell membrane molecules
        
        buindNwrite module:
        uses all other modules 
        to read previously collapsed DNA data file via position module and creates a membrane around it using membrane module
        it also creates free transcription factors in given microMolarite via freeTF module within the parameters which are found by using radius thus preserving the bp density of E.coli
        angler and bonder are there to create necessary bonds and angles
        it doesn't return anything just creates a data file 
        it takes 3 parameters
        1 = um of free transcription factors
        2 = data file to read
        3 = name of the data file to create then write everything.
        
        Change Log
        ==========
        
        0.0.1 (20/09/2020)
        -------------------
        - First Release
        
Keywords: data file,lammps,lammps data file,E. coli model
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Education
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
